Query= MSMg01no313_d15.b1 MSMg01no313_d15.b1 CHROMAT_FILE:
MSMg01no313_d15.b1 PHD_FILE: MSMg01no313_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:41 2005
(449 letters)
>mm_chr10_104405202_104406050
Length = 849
Score = 830 bits (429), Expect = 0.0
Identities = 444/449 (98%)
Strand = Plus / Plus
Query: 1 atacataagggaatggtagctaaagccgaccttttctgctgctttctggctcgggaacat 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 201 atacataagggaatggtagctaaagccgtccttttctgctgctttctggctcaggaacat 260
Query: 61 aacggatcacaggtcatagtaattgtgaggcctccattagattaccctccacaaccaaca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aacggatcacaggtcatagtaattgtgaggcctccattagattacactccacaaccaaca 320
Query: 121 gctggcttcagtggcttcttgcatccaacagcatgatctgccatgtcagtaatgcaagag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gctggcttcagtggcttcttgcatccaacagcgtgatctgccatgtcagtaatgcaagag 380
Query: 181 tgctgtcacagtgcattagcttgcttgggatacatcttactgacagaatcagaatctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgtcacagtgcattagcttgcttgggatacatcttactgacagaatcagaatctttt 440
Query: 241 gatttccatagactgaacttaaaataaatgagtggaatattccctaaggcatataatcaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttccatagaccgaacttaaaataaatgagtggaatattccctaaggcatataatcaa 500
Query: 301 ttgcatctgttgcaatcctggtatttcctttgccctgtttataccattactgcctctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcatctgttgcaatcctggtatttcctttgccctgtttataccattactgcctctact 560
Query: 361 gaagcagtattatcgttaagtgtttccatgaatatattctggcactagctcccaggacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagcagtattatcgttaagtgtttccatgaatatattctggcactagctcccaggacca 620
Query: 421 ttgctccactacaaacacttctagcctca 449
|||||||||||||||||||||||||||||
Sbjct: 621 ttgctccactacaaacacttctagcctca 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_d15.g1 MSMg01no313_d15.g1 CHROMAT_FILE:
MSMg01no313_d15.g1 PHD_FILE: MSMg01no313_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:41 2005
(832 letters)
>mm_chr10_104419477_104420706
Length = 1230
Score = 1408 bits (728), Expect = 0.0
Identities = 794/832 (95%), Gaps = 26/832 (3%)
Strand = Plus / Minus
Query: 1 tgtttaatcaactaaaattttcttttttcctttatatatatatatatatatatatatata 60
|||||||||||||||||||||||||||||||||| | |
Sbjct: 858 tgtttaatcaactaaaattttcttttttccttta-----------------------a-a 823
Query: 61 tatatatatataatcaacataatatagttctagtcacttggctttggcttaggaaattat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 catatatatataatcaacataatatagttctagtcacttggctttggcttaggaaattat 763
Query: 121 caaagttctgagtaaattcttttatattctttctctacttacctgaataggcttttgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 caaagttctgagtaaattcttttatattctttctctacttacctgaataggcttttgttt 703
Query: 181 ttataaaccacttggtatcactagctataaacaacctctccctaattaatgtagaatgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttataaaccacttggtatcactagctataaacaacctctccctaattaatgtagaatgaa 643
Query: 241 aatgttgtcaacttgttaagaaaaaaaaaaataatgtaatggactccagttaaatataag 300
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aatattgtcaacttgttaag--aaaaaaaaataatgtaatggactccagttaaatataag 585
Query: 301 gaatggaaaccaacggaagtaggggagactctagagggaaaccccgaatctgtcttttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaatggaaaccaacggaagtaggggagactctagagggaaaccccgaatctgtcttttta 525
Query: 361 ctatggctttgtgacaatgttctattactgtcaggtattcctggccattgctagattccc 420
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctatggctttgtgacaatggcctattactgtcaggtattcctggccattgctagattccc 465
Query: 421 ttctctctgtaaccctttcatattaaattcaaagcaaaagatcccaatacaaagggatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttctctctgtaaccctttcatattaaattcaaagcaaaagatcccaatacaaagggatct 405
Query: 481 ctattgccaagtatgtgtgttttaaaatagaggctcatactgatattttatggtacttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctattgccaagtatgtgtgttttaaaatagaggctcatactgatattttatggtacttat 345
Query: 541 tatatttcttatactagaccaagtcaaaaatctgaaaagacaaaccaagcattattttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tatatttcttatactagaccaagtcaaaaatctgaaaagacaaaccaagcattattttta 285
Query: 601 ttcctgtatatattttttgagacaggagtacacagtgtggtgctggctgtcctggagctt 660
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 284 ttcctgtatatattttttgagacaggagcacacagtgtggtgctggctgtcctggaactc 225
Query: 661 gctatgaagacctggctgtggcctcaacacagaggtttgcctgaatctatgcttctccag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gctatgaagacctggctgtggcctcaacacagaggtttgcctgaatctatgcttctccag 165
Query: 721 gcatgctgggattaattgtatgagccacgaagttcagctcanacacaaatttatccagca 780
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 164 gcatgctgggattaattgtatgagccacgaagttcagctcaaaaacaaatttatccagca 105
Query: 781 cctaccttanaaacactcaaaagtaaccttctctacatgtgcatagcagtga 832
||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 104 cctaccttaaaaacacgcaaaagtaaccttctctacatgtccatagcagtga 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 832
Length of database: 1230
Length adjustment: 10
Effective length of query: 822
Effective length of database: 1220
Effective search space: 1002840
Effective search space used: 1002840
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
