BAC Information

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BAC

Clone NameMSMg01-313I24
Chromosome10 (Build37)
Map Location 110,555,342 - 110,555,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313I24.T7 (MSMg01no313_i24.b1)MSMg01-313I24.TJ (MSMg01no313_i24.g1)
ACCAG435453AG435454
length1,2401,242
length of high quality
(start - end)
514 (141 - 654)324 (505 - 828)
definitionCHROMAT_FILE: MSMg01no313_i24.b1 PHD_FILE: MSMg01no313_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:23 2005CHROMAT_FILE: MSMg01no313_i24.g1 PHD_FILE: MSMg01no313_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGATTTGNNNNNNNGACAGTGGGCGCTATAGACTCACTAAGGGAGAG
GATCCGCGGAATTCACCATTTAGACTAGAACAATAAGAGCTGGTTGAGCC
ATTTGCATTTGCGCAGAGGGCATGAGACACCTATACCACCCCCTGGTTAG
AACTTCAGGACTCCACGCTACGGGGAATTCCCAGTGGGGATATTAGACTG
CTTTTTCTAGTCTCGTGTTAACCGGCTTTCCTTCACGAGTTTCTTCTCGT
GAGAATCAAGATAATATCTGAGATGCTAAGCGATTTAAAAAAAAAAGGCA
AGAAATGGAGCTGACAGCTCCTAGATGCTGTGAAGGAGGAAGTTTATTAC
AGATAAGTGGAAGAGTATAGTGAGAGACAGACACACGTGGGGGAACCCAA
GCAGTCATGACTCTGAACCACGTGGGGAGAGGGGGAGAAAAAGGGAGAGA
GAGGACTCAAGTACAGCAGCCAGGAGGCCAAAGGGGCAAAAGGAGAAAAA
GGGGGCAAAGAGTAGGTAGCCAAAATATCTGGATTATTTAGGGAAGAGCC
TCTGGGTAGAGGGTGGCGTGCCATCCGTGCCCTGGAACAGGTAGGGACTG
AGGGATGCTGGGAGAACCTGGAGGCCAGGTCCACTTTGATATGTTTGTTA
AGTAGATACCTCAGTTACTTGTCCTGAGTTTAAAACTTAACACTAAGAAG
ATCAATTAACTTAACATATATGAATTTTAGCAAAATTGAGAGCCGCATTA
TAACTATTTATCCCATAAGAGCCACCTTTACTATTTTTTGATTACTCCAA
CATTTGAATTACTGGAGAAACTAGAGAATTTATATTTCGGTTTTCTTTTT
TATGTCTTGGACATTTTATTTTTTCATTCGCCCTTTTCTTTTTTCCCCTT
AAAGCTTCTTCTTCTTTACCCTACATTCCTTCCCCTAATATCCCTATTAC
CTTCTCTCTTCCTTCAATCTAAGCCTCCTCTCACCTCTACAACGGATTCC
CCCCCTTCTACCCCTTCACCTCTCTCCTTTCTCTCTCCTATTGTCTCACT
CATTCTTATTCACTTTTTTTTCCTTACCCTTATACTTTCATTACCTTCTT
TCCTTTTCATCATTGTCCACTTCTCTTTCTTTCCTCCTTCTTTCCTAAAC
TTCAATTCCTTTTTTTTCCCTTCCTTCATACTCCCATATTCCTACTTTCA
ACACTCTCTTCTTTTCCTCTCCTCTTATACTTCTCCTTAT
NNNAAATAAGATGGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACATTAATAAAGTTTATTTTTACTT
AGGAGAGGATCACACAGTATAGTAATACCCTAACAAATTCTTCCTGCTGA
TGAATTCTACTAAAAAATATCCTAAAACAAATGTTAACTAGTACATTTCT
CAAAATCCCAAATTCTTTCCATTTGTATAAAAAATAGGGTGGCAGCAAAG
AAAGTTCATGAGATTTTTTTTTTAAAGTTTTACTTAACAAATTTCAAATA
TTACAGGCAAAGCTCAAGATGTTCACCTGAACTGTCAAAGAGAGCACAGC
GTTTGCAGTCCATGTGACGCGGTACACAATGAGGAAATCAAATTATTGAA
AATTATGCCAGGCTTTCTTAGCATTAAAAATTGAACACAGTCTTAGACAC
TTTGTTTTTTTAACCCCCACCTGTCAAGCTGTGGTGGCACAAAAAAAAAA
TCCCAGTGCCCAGGAGGCAGAGGCAGGCACATCTCTTGAGTTTCATACCA
GCCAGGGCTGCAGAGTGAGACCTTGTCTCAAAATAAAAATAAAGTGACAA
GATGGCTTTACCAATATTCCAAATAATATTCAGATAGGAAGGCAATTAAA
ACATTTTGCAGGGACCAGGGAGATGGTTCTATGGGTAAAGGCATTTGCCA
CCAAGCCTGATGACTTATTCCTGACACCCATATGGTAAAAGGAAAGAACT
GACCATGCAGGCACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACTCACACACACACACAGAGGA
AGAATTTAAAAAGCCATTTTGCAAAAGCTATGTAGCCATTGGGTGAGTCC
CTAAATCTTTCTTCATTTTTCACTTTTTCTTTTTTTTGCTTATTATAATA
CAGAATAGCATATACTAAGTGAAAATACTTCTAAAAAACATACCACCATC
CTTTTTCGACACTTAACGGCCTTTGCAAAAAATATAAAAATTGAATTCTA
GGTTGGCCCAAAGAGAAAATCCACACTTTATATTGGTTAACCCTTTTCCC
TCCCCCAACAAAAAAAAACCCTTCTCACCTTGGTAGAGGTTTTCCCCCCA
AAAGTCCGCGCACAAGACCCAACCCCCCCGCTTTTTTATATTTAAAAGTA
CCTGGTGCGGGGGCCTTTTTTCCTCCCTTTTTATAAGAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_i24.b1 MSMg01no313_i24.b1 CHROMAT_FILE:
MSMg01no313_i24.b1 PHD_FILE: MSMg01no313_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:23 2005
         (514 letters)



>mm_chr10_110555142_110556055
          Length = 914

 Score =  882 bits (456), Expect = 0.0
 Identities = 501/518 (96%), Gaps = 7/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctggttagaacttcaggactccacgctacggggaattcccagtggggatattaga--c 58
           |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||  |
Sbjct: 201 ccctggttagaacttcaggactccacgctagggggaattcccagtggggata--agaggc 258

                                                                       
Query: 59  tgctttttctagtctcgtgttaaccggctttccttcacgagtttcttctcgtgagaatca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctttttctagtctcgtgttaaccggctttccttcacgagtttcttctcgtgagaatca 318

                                                                       
Query: 119 agataatatctgagatgctaagcgatt--taaaaaaaaaaggcaagaaatggagctgaca 176
           ||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||
Sbjct: 319 agataatatctgagatgctaagcaattaaaaaaaaaaaaaggcaagaaatggagctgaca 378

                                                                       
Query: 177 gctcctagatgctgtgaaggaggaagtttattacagataagtggaagagtatagtgagag 236
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 379 gctcctagatgctgtgaaggaggaagtttattacagataagtggaagagt-tagcgagag 437

                                                                       
Query: 237 acagacacacgtgggggaacccaagcagtcatgactctgaaccacgtggggagaggggga 296
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 438 acagacacacgtgggggaacccaagcagtcatgactttgaaccacgtggggagaagggga 497

                                                                       
Query: 297 gaaaaagggagagagaggactcaagtacagcagccaggaggccaaaggggcaaaaggaga 356
           ||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 498 gaggaagggagagagaggactcaagtacagcagccgggaggccaaaggggcaaaaggaga 557

                                                                       
Query: 357 aaaagggggcaaagagtaggtagccaaaatatctggattatttagggaagagcctctggg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaaagggggcaaagagtaggtagccaaaatatctggattatttagggaagagcctctggg 617

                                                                       
Query: 417 tagagggtggcgtgccatccgtgccctggaacaggtagggactgagggatgctgggagaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagagggtggcgtgccatccgtgccctggaacaggtagggactgagggatgctgggagaa 677

                                                 
Query: 477 cctggaggccaggtccactttgatatgtttgttaagta 514
           || |||||||||||||||||||||||||||||||||||
Sbjct: 678 cccggaggccaggtccactttgatatgtttgttaagta 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)