BAC Information

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BAC

Clone NameMSMg01-313K03
Chromosome10 (Build37)
Map Location 112,624,158 - 112,624,416
singlet/doubletsinglet
Overlap genenone
Upstream geneCaps2, Kcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313K03.T7 (MSMg01no313_k03.b1)MSMg01-313K03.TJ (MSMg01no313_k03.g1)
ACCAG435504AG435505
length1,2641,215
length of high quality
(start - end)
424 (43 - 466)264 (188 - 451)
definitionCHROMAT_FILE: MSMg01no313_k03.b1 PHD_FILE: MSMg01no313_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:33 2005CHROMAT_FILE: MSMg01no313_k03.g1 PHD_FILE: MSMg01no313_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGCTATGGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTTCTAAGACTTTTATCATGAATGAGTGTTGGATTTTGTTGA
ATGCTTTTTCTGCATCTAACAAGACGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAATGGATTACGTTGATGAACTTCCATATATTAAACCATCC
CTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAA
TGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGCATCG
ATATTCATAAGGGAAATTGGTGTGAAGTTCTCTATCTTTATTGGATCCTT
CTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTTGTTA
TAGTTCCTTCTACTTCTATTTTGTGGAATAGTTTGTGNAGATCTGTATTT
TTTTTTCCCCCCCCCCNCNGGNAGAACTCTCCCCAAAAAAAAGGGGGGGG
NGNNNNNNNNNNNNCNGNNNNNCNANNANCGACCGCNNCNACCCCCNCAC
NCAANACGCCCCCACACACACCCCCAACCCGACCCCGACCCAACCCCGCC
ACCCGAAACCCGCCCCCACACACGACCCCACAACCCACACACCCCCCGCC
AGCCCACAACCACCCCCCGCACAACCCACCCACCCAGCCCACACCACACC
CCGGCCCCACCCCCACCCCCACACAACCCCACCACCCACCCCCANCAACA
CCAACCGCCAAACCACCACCCAACAACCCCACAACCCCCCCACCCCACAA
CCCCCCCCCCACCCCCCACCCCCGCACAACAACACCACACACCACCCACC
ACCAACCACCCACCCCACAACCACCCCCCCCCACACCACACNCCACAACA
CCACCCACAACCCCCCCCACCCCCCACCCCACCCCCCCACCACCACGCCC
CCCCAACCCCCCCNCCCCCCCCACACCACCACCACCCCCCACACCCCCAC
CCCCACACCCACCAAACACCACANCACCCGCCACACACACCACCCCCCCC
ACAAGCAACCACCCAAACCACAACCACCACAACACCACACCCCACCACCA
CCACCCCCACCCCACCCCACAACCCCCCCACCACACCACCCAACCACCCC
CCACCCACACACCACACCCACCCCAACCACCNCACACAACCACACACACC
CGACACCACCACAACAACACCCCGCCACAAAAAACCCACACAAAACAAGA
ACCACAAAACAACA
NNGGAAAATGATGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGATAGTTTGGTTAGTTGATATTGTTCT
TCCTATGGGGTTGCAATCCCAAACCAGGAAAGGGAATATTATTTGAAATG
TAAATGAATAAAATGATTAATAAAAAAATATTTGTCATAAAAACTAATTA
AAAAACTATCTAATCTGTACATTATTTAAGTGAGATGGATCAGAAAAAAA
ATCTAGATTTAGAAGCCAAGAATCAATGAGGAAATATTAAATCAATACAT
AAAGAAAATAAGAGCCAAGGACATGAGCATTACTCAATGAATGAGATGTA
GAAAGTGATCAATAATCTCCAAAAGTTTATCTGCAATTTAAGTTATGTTG
TTCTTCTAAATTCATTAGCTTGAACTTTCCTCCATAGTTTGGTTTTGTGC
GTTTTTTTTACCCCCCCCCAAGNTTCAGNGAANACCTCAAAAAAAAAAGG
GGGGGCTTCTTNNNNNNNTGTCTCTNCNNNAANNNNCNTCNAANTGTTTT
GNNNNCCCTGCCTTATCCTNCNCCCNNTNCNCNTNCNNCNNGATTGCNNC
CNCCTGNNNGCCNNGAACAGATGCCTCATGTAAACAAGAGTAGCTGGAAG
CTAATCTTTCACTTGTAAACACAAGAGCTATGATAAAATAAGTGTTTTGT
TGTTGTTGTTGTTGATGATGATTCCAATAGTATCTCAGAACTGCATTGCT
AGCATAACAATGGAATATCCAAAGGTACAAAATTCCTTTGAACTTGGTCA
ATTCAAGTACTTTACTGCGGTTTACATTATTGTAACTATGTTTCACTAAA
ATAGGTCCATCATGATGAGGAGAGAAAAAACCCACACTACTTTCTTGTTA
AATAGTTAATTAGGTACGCAAGTTTAATGTAACATTTTTTGTATCCCTTT
TCTTTAATTTAACTTCTCCCTTTTTTTTTCCTTNCCTTCCTCTATTATCT
CTCATTTTCCCCTTTTTCCTTTTCCCTCTTTTTATCATTCCTTCTCCCTC
TTTTTTACTCCTTTTCTCCTCTTCCTCTTTTTTTCATTTTCATCCCCTCT
CATTTCTCCCTTTCTTCCTCTCTCTCTTCTCTTTCCTCTTCTCTCTCTTC
TTTTCTCCCTTTTTTCTTTTTCTTTTCTCTTCTCCCCTTTATCTCCCTCT
TTCCTATCTTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_k03.g1 MSMg01no313_k03.g1 CHROMAT_FILE:
MSMg01no313_k03.g1 PHD_FILE: MSMg01no313_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:33 2005
         (264 letters)



>mm_chr10_112623954_112624618
          Length = 665

 Score =  455 bits (235), Expect = e-132
 Identities = 253/259 (97%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   aactaattaaaaaactatctaatctgtacattatttaagtgagatggatcagaaaaaa-a 63
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 aactaatttaaaaactatctaatctgtacattatttaagtgagatggatcagaaaaaata 264

                                                                       
Query: 64  atctagatttagaagccaagaatcaatgaggaaatattaaatcaatacataaagaaaata 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 atctagatttagaagccaagaatcattgaggaaatattaaatcaatacataaagaaaata 324

                                                                       
Query: 124 agagccaaggacatgagcattactcaatgaatgagatgtagaaagtgatcaataatctcc 183
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 agagcaaaggacatgagcattacttaatgaatgagatgtagaaagtgatcaataatctcc 384

                                                                       
Query: 184 aaaagtttatctgcaatttaagttatgttgttcttctaaattcattagcttgaactttcc 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaagtttatctgcaatttaagttatgttgttcttctaaattcattagcttgaactttcc 444

                              
Query: 244 tccatagtttggttttgtg 262
           |||||||||||||||||||
Sbjct: 445 tccatagtttggttttgtg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space:   167280
Effective search space used:   167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)