BAC Information

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BAC

Clone NameMSMg01-313M23
Chromosome10 (Build37)
Map Location 113,146,034 - 113,146,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042639, 4921506J03Rik, LOC100042655
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313M23.T7 (MSMg01no313_m23.b1)MSMg01-313M23.TJ (MSMg01no313_m23.g1)
ACCAG435632AG435633
length1,2601,247
length of high quality
(start - end)
678 (83 - 760)365 (83 - 447)
definitionCHROMAT_FILE: MSMg01no313_m23.b1 PHD_FILE: MSMg01no313_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:56 2005CHROMAT_FILE: MSMg01no313_m23.g1 PHD_FILE: MSMg01no313_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCACNNNNNNAACAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCCAGCAATGCTGCTAACTGTTAGTCACTTGATCAACCAACTAG
AAAGGAAAAGCATATCGTGATGAAGAATTGCAAAATTATGTATATTAAGA
ACCTTTCAATTAGTAACAATCATTGTATAAAACTCATTTTCTTATTTTTA
TGTTATTTGATCATATCATTCTCCTCTTTCAACACCTTCCACAACTTTCT
GCACCTCCTTACAAACACAATTTCAGGTTCTATTTCTTTCTTTAAAATAT
CAAACCTGAGCCAATAAACAAAGAAGCAAACAATCAAACAAGCAATAAAA
TAAAACAGGATTTGCTGCATCCAAGAAATGCATATTAACATCAAGGATAA
ATATCATCTCAGGGTAAAAGAATGGAAAAAGACATGCCAAGCAAATGGAC
CCAAGAAACAACCTGGTGCAGCAGTTTGAATATCTAACAAAATAGACATC
AAAAGAAAACTAACCTGATAAAATAAGGAAGGACATTACATATCAATCAN
AAGAAATATCTGCAAAGAGGATATTACAATTTTGAACATTTATGTACCAA
ACACATGATCACTCAGGTTCCTAAAAGAAATGATGCTACTGCTAAAATCA
CATATTGACCCTCAAACTGTGATAGTTGGTGATTTCAATACCCCACTTGC
CAATAGACAGGAAACCCAAAGAAACACAAAGCCAGTGAAATGGTGAAGAT
AATGATATTATAAACCAAATGGCCCTAGTGGATATTTATAAAACATTTCA
CACAAACCTAAAAAGATTATATTTTCCTTCACTGCCAATCTTGGAAATTC
TCCTCCAAATTGTCCACATTATGTGTAAACAAAGTAAGTCTCAGATAACC
CAAGACGATTGAATAACACCCCTGTATTTGATCTGATATCACCAAATAAA
GCTTGTCTATCTACAGGCAACAACCATCCTTAAAAATTTATGGAAACTGA
AACAATTCCCTACTGAATGAATTAACCTGTTTAAAATAGGAATTTATAAA
GAATGATAATGACTTGAATTGTATTACATTTAAAATGCTCAAAGTTACCC
AAAACTTTTTGGAACCTAATGGAAAGCCTTTTTTAAAATGTAAATTTTCA
TATTACCCAATTGCCCTCCTTAAAGTAAAGGGGAACCCCCTTTTTTACCT
GTTACACATTACACTATCTTTTACATGTCTAATAACCATTCTAACTATCT
TATTTCTCCC
NNTTTTGAGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTTAGTGTTTTAATAAATACTGTAAGACA
AGTGAATACCTTAATTTTCACCAAACATCATTCTTCCAAATTATTTGGTG
AGATTAAATATATTTTAGAATATATTTAGAATAAGTTTTCTTCTTAGAGT
TGCATGATAGTATCTATACCATCTCTATAATGTGTGCCAAATACTTACGA
AGGATTTCATGATCAATAAAAATGAGTTCTCAATCAAAAAATTTTTTCTT
TTTATTTTATTTATCATAAGAAAATTATAATTCTCAAGGTTTTTTCATTA
TTATAGTAAAAGACAGAAATACATTTCATAAAATACCCTATATATTTAGA
GTTCCAAATTAGTACTTTACCAGTAAGTTTCCTTTACCTTTAATTTATTT
TTTTACCCCCCGCCGCCTTAAGCAATCCTGTGACAGAATAAGGGGTGACT
GANTCATCAGTGTCAGCTATGCCAGTAAACTATTTCAAACTCTAATGTTT
TCCTTTTGTCTTAGAACCCTCTAAAATTATTACCCATCTGCAAACATACA
CACAAAGACCTGGCTATGCATTTTCATCCAGATCATTCAGTAACTGTAGA
GGTACCTCAGTGTACAATAAGGTTCATTAATTCCTCATGCTTAACATCAT
TGCTAAAAGAGTCAGCGCCAACACAAGTGATCTAAAGGCCATTTGCCTCT
TGATCAATGTATTTATGTCTTCTCTCCCTTAAAGACCCTGAAGTGGTTAT
AAAGAGTTTTATTAATTGGCGAATATAAAAACCATAATTACCATGGTATA
AAATTTACCTGAATTACAACCTGGACTAATGTTTCTATGAAACCATATGC
CTAACCCTTTATTTTTTCAGTATTTTACTTACGGTTCTATTAAGGAAAAT
ATTTCTTGGCAACTTCCCTTCCCTTTAAAACCTTTAAGTCCCACTTTTTT
TAAAGAAAATCTTGATGGCCTTTTTTTCCGAACCTTTAACCTTTCTTTTA
ACTTTTTATTAAAACCCAATGATTTTTGACCTTATTTTCGGCCAAAAATC
TCCCTTCGACCTCTTTGTATCCCAAATATTCTTTTTTACCTGCTCTGGCT
ATAAGGTTATCATTTTTCTATATTCATGTCACTCTTGATATATCTTTATA
CCCTCACTCCATATCCCTCCAAATCATTTTCGCTCTAACACACTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_m23.g1 MSMg01no313_m23.g1 CHROMAT_FILE:
MSMg01no313_m23.g1 PHD_FILE: MSMg01no313_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:56 2005
         (365 letters)



>mm_chr10_113145844_113146608
          Length = 765

 Score =  592 bits (306), Expect = e-173
 Identities = 354/376 (94%), Gaps = 12/376 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaatactgtaaga----------caagtgaataccttaatttt-caccaaacatcat 49
           ||||||||||||||||          ||||| |||||||||||||| ||  |||||||||
Sbjct: 191 aataaatactgtaagaaaaacaatcacaagttaataccttaattttacaataaacatcat 250

                                                                       
Query: 50  tcttccaaattatttggtgagattaaatatattttagaatatatttagaataagttttct 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcttccaaattatttggtgagattaaatatattttagaatatatttagaataagttttct 310

                                                                       
Query: 110 tcttagagttgcatgatagtatctataccatctctataatgtgtgccaaatacttacgaa 169
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 311 tcttagagttgcatgatagtatctataccatctctatagtgtgtgccaaatacttaggaa 370

                                                                       
Query: 170 ggatttcatgatcaataaaaatgagttctcaatcaaaaaattttttctttttattttatt 229
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 371 ggatttcatgatcaataaaaatgagttctcaatcaaaat-ttttttctttttattttatt 429

                                                                       
Query: 230 tatcataagaaaattataattctcaaggttttttcattattatagtaaaagacagaaata 289
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 tatcataagaaaattataattctcaagtttttttcattattatagtaaaagacagaaata 489

                                                                       
Query: 290 catttcataaaataccctatatatttagagttccaaattagtactttaccagtaagtttc 349
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cgtttcataaaataccctatacatttagagttccaaattagtactttaccagtaagtttc 549

                           
Query: 350 ctttacctttaattta 365
           | ||||||||||||||
Sbjct: 550 ccttacctttaattta 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)