BAC Information

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BAC

Clone NameMSMg01-316E10
Chromosome10 (Build37)
Map Location 105,804,592 - 105,804,930
singlet/doubletsinglet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758, EG639162
Downstream genePpfia2, Olfr1556-ps1, 8430416H19Rik, Lin7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316E10.T7 (MSMg01no316_e10.b1)MSMg01-316E10.TJ (MSMg01no316_e10.g1)
ACCAG436669AG436670
length732738
length of high quality
(start - end)
339 (67 - 405)229 (129 - 357)
definitionCHROMAT_FILE: MSMg01no316_e10.b1 PHD_FILE: MSMg01no316_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:59 2005CHROMAT_FILE: MSMg01no316_e10.g1 PHD_FILE: MSMg01no316_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAATTCC
TAGAAATATCCCAATAAGTGTTTGACTTAAGTGTGAACATAGAAAAGGGA
GGAGAAAAACTTCCTTGCCTTCATGGGTCATCGATGCCACTCTAAGCCCC
ACCGTGCTGGTTAAATACTTAGAAAAATTGTGGATTGGGTTACATGTAAC
ATCATAATTTCCTTTAGCACTAGGACATCAGAATTTAATATGCTTTAAAT
AAACACCTCTGCTTTAGACTCATCGTCATAATAGAAATGTTATGTTAATA
AGCATGTAATATTGTGTCTTTTAACTGGTATTTACACTAAGTAATAAAAG
TCAAAACTACCTACTATGAATAAGTCACCTCCATGGTGACTACAATACAG
GTTTAGCATTCACACCTTTCTAATATTTAAACAAATACCTATAAATTGCT
AATCGCTGCCTTACCACTTTATGTATCCATCATGCCATGGGATAGGTCAT
GTTACAACTGCCTCTCACATTAAAATCCTGCAGAGAATCCAGAAGCCTTG
TAATATTTCTGTGCAAACACTGTGATTTTTGTATTTTATACTTGCAAAGA
ACAGAAAGACAGATTCTCACTCGCTATCTTTCAGTTGTGTGTGCATTTAC
TTATTTTAGGTGAGATTTCTTCACTCTTCATGTTTAATTCAAATATATCA
TAAAGCGTCGTTACTGACATTAGTGTGATACA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACACAATATATGTNG
AACTATAGAAGGTTCTCAGAAATTCAATAATTCTACCCATGTGTGAATAC
TTCAAACTACAATAACAGCTGGCCCGCCATGATAGACTTACTATTGTCGT
AGTGACACAGAAGTTATGAGAATAACCAATCACCACATGGTAGGGTGGAA
TTTGTGCTTTTTACTGTTACCTGGACCTCAAATCTATTGTCTAATAAGGT
CTCAGAGCCTAGGGTGAGCCAAATACTATTACTTTGATAAACAGATACCA
TAGTAAACTGGTTCCCTAATTTTGTTGTACCCATAGGTTATCGAATTTTT
CAACCTTCTTCAGAGAGACTTTTTTTCTGAACTAAATAGTAATTAGTAGA
GTTTCACAATTGGTCACCACCCCCCAGAATAAGAAATGTACAATACTGAC
TTCTCAATGTGACCTCTGTATCACAGCCCTTCCTGCTAGACTCAGAGATC
ATCATGGAAGAGAGCACATCACATTGTGATAGTCTAAAGCATTGGATATC
TTCAGAGAACTATTATTTGCTGAATACAGCCACTCTGCTGCACATATGAC
CTCTCATTGATGATAACTCTATACATAAGACTCTCACTAAATCCAGCTAG
CTAAAAATCTCTCTCAGAGATGGAGAGTTCTACCATGCATTTCCACTCTT
ACCTGACAATTCCCTGTGTATTGCACGTATATACATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_e10.b1 MSMg01no316_e10.b1 CHROMAT_FILE:
MSMg01no316_e10.b1 PHD_FILE: MSMg01no316_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:59 2005
         (339 letters)



>mm_chr10_105804392_105805130
          Length = 739

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttgacttaagtgtgaacatagaaaagggaggagaaaaacttccttgccttcatgg 60
           |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||
Sbjct: 539 agtgtttgacttaagtgtgaatgtagaaaagggaggagaaaaacttccttgtcttcatgg 480

                                                                       
Query: 61  gtcatcgatgccactctaagccccaccgtgctggttaaatacttagaaaaattgtggatt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 gtcatcgatgccactctaagccccactgtgctggttaaatacttagaaaaattgtggatt 420

                                                                       
Query: 121 gggttacatgtaacatcataatttcctttagcactaggacatcagaatttaatatgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gggttacatgtaacatcataatttcctttagcactaggacatcagaatttaatatgcttt 360

                                                                       
Query: 181 aaataaacacctctgctttagactcatcgtcataatagaaatgttatgttaataagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaataaacacctctgctttagactcatcgtcataatagaaatgttatgttaataagcatg 300

                                                                       
Query: 241 taatattgtgtcttttaactggtatttacactaagtaataaaagtcaaaactacctacta 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 taatattgtgccttttaactggtatttacactaagtaataaaagtcaaaactacctacta 240

                                                  
Query: 301 tgaataagtcacctccatggtgactacaatacaggttta 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaataagtcacctccatggtgactacaatacaggttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)