Query= MSMg01no316_j01.b1 MSMg01no316_j01.b1 CHROMAT_FILE:
MSMg01no316_j01.b1 PHD_FILE: MSMg01no316_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:20 2005
(558 letters)
>mm_chr10_127023965_127024922
Length = 958
Score = 973 bits (503), Expect = 0.0
Identities = 547/567 (96%), Gaps = 9/567 (1%)
Strand = Plus / Minus
Query: 1 tgcagaataagaccctgtc---------caaaaaaaaaaaatcaaaagtaaaactggaaa 51
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 737 tgcagaataagaccctgtcaaaaaaaaaaaaaaaaaaaaaatcaaaagtaaaactggaaa 678
Query: 52 aattctgtaaattagccgggtaaggtatacatgcctagagtccctgcactgtggaggctg 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aattctgtaaattagccgggtaaggtatacatgcctagagtccctgcactgtggaggctg 618
Query: 112 aagcagggggattacaagttccagtccagcatggatattctagctcaaaaccaaaaattt 171
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aagcagggggattataagttccagtccagcatggatattctagctcaaaaccaaaaattt 558
Query: 172 aaaaaggaaattaggagaaataaaaaccctgatccaaccagtgaacatgaatatgatgtg 231
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaaaggaaataaggagaaataaaaaccctgatccaaccagtgaacatgaatatgatgtg 498
Query: 232 gtaagtcacacgaggtactttcttccctaggtgggtagctctgttttatacacagccctc 291
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 gtaagtcacacgaggtactttcttccctaggtgggtagttctgttttatacacagccctc 438
Query: 292 atccagtgtgtacatgaatctcctgcctctttcggctcttacccgccacagtattctccg 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 437 atccagtgtgtacatgaatctcctgcctctttcggctcttacccgccacagtattctctg 378
Query: 352 ctttatccttactatttatttataggactgaggatcaacccagtgcctcatatacactag 411
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 377 ttttatccttactatttatttattgtactgaggatcaacccagtgcctcatatacactag 318
Query: 412 ataataactccaccaacgtgctacaccttcagttccttacattcatgattttattgatta 471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ataatcactccaccaacgtgctacaccttcagttccttacattcatgattttattgatta 258
Query: 472 gtttttactttttggtgggtattttgcctgcgggtatgtctgtgttccatgtgcatgcag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 gtttttactttttggtgggtattttgcctgcgggtatgtctgtgttccatgtgtatgcag 198
Query: 532 tgcccatagtggctgggcaaaaggggg 558
|||||||||||| ||||||||||||||
Sbjct: 197 tgcccatagtgggtgggcaaaaggggg 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_j01.g1 MSMg01no316_j01.g1 CHROMAT_FILE:
MSMg01no316_j01.g1 PHD_FILE: MSMg01no316_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:20 2005
(585 letters)
>mm_chr10_126870096_126871080
Length = 985
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%)
Strand = Plus / Plus
Query: 1 tgtcctgaaactgagcaaggagaaaacatttggggactccagtgttgcttccatagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcctgaaactgagcaaggagaaaacatttggggactccagtgttgcttccatagagca 260
Query: 61 ctgccattgctgtcatctcccctgccccaaactgaactgttaggatgctagaatggcagt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccattgctgtcatcccccctgccccaaactgaactgttaggatgctagaatggcagt 320
Query: 121 gtttcttatttatcagcagagtccatcactcagcatttgcagcagtgtttgtggaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttcttatttatcagcagagtccatcactcagcatttgcagcagtgtttgtggaaactg 380
Query: 181 gttttatttaagaggggagggtaagctcattttttagctcttactgatagagactgttgc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gttttatttaagaggggagggtaagctcattttttagctcttagtgatagagactgttgc 440
Query: 241 catggagtcctgaatcggattggctgacctaagggccaatgaaaagagagaacataaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggagtcctgaatcggattggctgacctaagggccaatgaaaagagagaacataaaac 500
Query: 301 gtaccatcatttaaccttgaagaatttctttattaggtgatttataacattaatattgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaccatcatttaaccttgaagaatttctttattaggtgatttataacattaatattgac 560
Query: 361 aaaatgtacagtcatgaaataagatgtttcaaaaatgataaaaaggtgcttttctcaaac 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgtagagtcatgaaataagatgtttcaaaaatgataaaaaggtgcttttctcaaac 620
Query: 421 tttgttgttaaatctgagtgttttacctgtatatcttcagtgtgatctgattgggagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgttgttaaatctgagtgttttacctgtatatcttcagtgtgatctgattgggagatg 680
Query: 481 aaatccttacctcccatttgtaaattgcactcctgctacagccagaggcatgtgacaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatccttacctcccatttgtaaattgcactcctgctacagccagaggcatgtgacaggg 740
Query: 541 ttatgaggtttggttttttgtgacagcgttggtttggtttgcttt 585
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 ttatgaggtttggttttttgtgacagcattggtttggtttgcttt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
