BAC Information

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BAC

Clone NameMSMg01-316P12
Chromosome10 (Build37)
Map Location 97,333,814 - 97,507,851
singlet/doubletdoublet
Overlap genenone
Upstream gene4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494, Atp2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316P12.T7 (MSMg01no316_p12.b1)MSMg01-316P12.TJ (MSMg01no316_p12.g1)
ACCAG437169AG437170
length721843
length of high quality
(start - end)		316 (70 - 385)212 (77 - 288)
definitionCHROMAT_FILE: MSMg01no316_p12.b1 PHD_FILE: MSMg01no316_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:52 2005CHROMAT_FILE: MSMg01no316_p12.g1 PHD_FILE: MSMg01no316_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,333,814 - 97,334,129)(97,507,643 - 97,507,851)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAATCTTTTCCAATAAAACATTGTGGTAAATGCAGGAGTTCTTATTT
TCCACTTTACTGTTGCAAAGAACACAATTGTATAGAAATAACATATGTTT
TGATTTATAGCTCTGGATTTAAGGACACTTGAGCCTTCTAGAAAAATCAT
GTTGGAATGTCTTTAATCTATTATTTTTTTTCTTATAAATAGATTCTTCT
CTCATACAATCCATTCTGACTACAGTTTTCTCTCCACCCACTCTTCCCCA
ATCTCCCTCATTCCTATTTCTACTGTCTTCTGTTTCCTTTCCAGGAAAAT
GAAGGCCTCTAATAGTTGACAGCCAAACAAGATACAATACCACAGGGTGA
AGCTCTTATATCTACACAAAACAAGCCAAGCCCATGTGGAGGAAATGGGT
CCCCAGAAGCAGGAAGATCCCCAGATACCGCCGGGTCCTAGAATGGTAGC
CCGAAATTTCTGGTAAAAAAAAAAAGGTAAACCGGAAAGCCCCCCCTGGG
GGAAATTTTTTTTTTTTTGTTCAGATACCTGTAAAAAAAACCCCCCTTCT
TCTCCCTCTATCAAAAATTTATTTTTTTTTTTACACTTAACTTCTTTTCC
CTCTCCTCTTTAGTAAAAGACATTAAATTCTTCTTTTTTTTTCTTTTTTT
TTTATTTTTACCAACCATATC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGTTGTCATTTATTCCCATG
CTTATTTAGTCATTAAACAGTCATGGGCTTAAGTCTATCAGTATAAGCAT
TACATATTTTTGACATATCAGGATAATATGAGATGGGACTCTCCCAGAGA
CTGCTGGCCACTAGTCCAACAGGACAAAAGGAACAGAGGCAGTGGTGGGG
AGGGGGTGGGTGTTCAGATGATGATGATAAATTGATTTGGANATCAGCTT
CAGTGAGACTGGTCCATTTTATTTTTTGTACACAAGGCCTATCGAGATCT
CCGTGCAGTGGGTTTTTTTATTTTCTCCGCCGCTTGCTTGTTTTTGTCCA
TGTCTATTTTGCTTTATTTTTTCCCCCCCCCCCACAATAGTAACATTTCT
TTTTTCTGGGCGGCCCCGCCTGTCTAACTTTGTGTACATATCTACTTCCG
ACTCCCTGTTCTATCCTGTTTTCTCCTACCCCGCCTCACTCCCCTTTTTC
CTCTTCTCCCTGCTATCCCTCATCGTTTTCTCTTCTTCCCATTCTCATCT
CCTCCCTCCCCTCTTTTTTACCCCCCCCTCCTCCAATCGTTGTATTCTTC
CATACCATTAACCACCCCCCCTTTTACCTTCTCTCTATCCCTTTCCGTTT
TTTCTTGTCCTCAAGTTGTTTCGTCGTCCTCCTCTTCTTTTTGTCTCCCT
CCCCCTCTTCTTCCCCTCGTATCTTTTTGCAGCATTGTCTTATCCAGTTT
TTTCGTTCTACCTTTTTTTTGCTAGCTTCTCTCTCCCTGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_p12.b1 MSMg01no316_p12.b1 CHROMAT_FILE:
MSMg01no316_p12.b1 PHD_FILE: MSMg01no316_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:52 2005
         (316 letters)



>mm_chr10_97333614_97334329
          Length = 716

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattgtggtaaatgcaggagttcttattttccactttactgttgcaaagaacacaatt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aacattgtggtaaatgcaggagttctaattttccactttactgttgcaaagaacacaatt 260

                                                                       
Query: 61  gtatagaaataacatatgttttgatttatagctctggatttaaggacacttgagccttct 120
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagagaaataacatatcttttgatttatagctctggatttaaggacacttgagccttct 320

                                                                       
Query: 121 agaaaaatcatgttggaatgtctttaatctattattttttttcttataaatagattcttc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaaatcatgtcggaatgtctttaatctattattttttttcttataaatagattcttc 380

                                                                       
Query: 181 tctcatacaatccattctgactacagttttctctccacccactcttccccaatctccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcatacaatccattctgactacagttttctctccacccactcttccccaatctccctc 440

                                                                       
Query: 241 attcctatttctactgtcttctgtttcctttccaggaaaatgaaggcctctaatagttga 300
           |||||||  || |||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 441 attcctaaatccactgtcttttgtttcctttccaggaaaatgaaggcctctaagagatga 500

                           
Query: 301 cagccaaacaagatac 316
           ||||||||||||||||
Sbjct: 501 cagccaaacaagatac 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_p12.g1 MSMg01no316_p12.g1 CHROMAT_FILE:
MSMg01no316_p12.g1 PHD_FILE: MSMg01no316_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:52 2005
         (212 letters)



>mm_chr10_97507443_97508054
          Length = 612

 Score =  404 bits (209), Expect = e-117
 Identities = 209/209 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgttgtcatttattcccatgcttatttagtcattaaacagtcatgggcttaagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tctttgttgtcatttattcccatgcttatttagtcattaaacagtcatgggcttaagtct 350

                                                                       
Query: 61  atcagtataagcattacatatttttgacatatcaggataatatgagatgggactctccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atcagtataagcattacatatttttgacatatcaggataatatgagatgggactctccca 290

                                                                       
Query: 121 gagactgctggccactagtccaacaggacaaaaggaacagaggcagtggtggggaggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gagactgctggccactagtccaacaggacaaaaggaacagaggcagtggtggggaggggg 230

                                        
Query: 181 tgggtgttcagatgatgatgataaattga 209
           |||||||||||||||||||||||||||||
Sbjct: 229 tgggtgttcagatgatgatgataaattga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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