BAC Information

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BAC

Clone NameMSMg01-317B11
Chromosome10 (Build37)
Map Location 106,549,906 - 106,550,216
singlet/doubletsinglet
Overlap gene8430416H19Rik
Upstream geneEG639162, Ppfia2, Olfr1556-ps1
Downstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317B11.T7 (MSMg01no317_b11.b1)MSMg01-317B11.TJ (MSMg01no317_b11.g1)
ACCAG437259AG437260
length738742
length of high quality
(start - end)
311 (428 - 738)306 (437 - 742)
definitionCHROMAT_FILE: MSMg01no317_b11.b1 PHD_FILE: MSMg01no317_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:02 2005CHROMAT_FILE: MSMg01no317_b11.g1 PHD_FILE: MSMg01no317_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAGGTTGCCGATAAATACTGTGTTCTCCTGCTCAGGAAACA
GTAATTGTCAGCTGATTTAAAGCTCCCTCCCTACTGTTCAGTATGTTGGG
CGCAGTAAAATACAGCTTGTTTTATCAGAGTGCAAATATGGTTGCATAGC
TAGTACGAAATTTATCAAATATTTCTGCCATACAAATCCAGATATTTTTA
TTTATCTTATGCCACTAGTCTTTATATACATAAATAAATTAGTATTATAT
GTTTCAGAGGAGAACAGATACAAGAAGAATGAAATACTAAAATTAATTGA
AATTGTTATAGAAGCAATTCAGTGTATTTAGAACAAAAGTAGGTTAGATT
CAAATCTAGGTTTGTCATCCACCCGCCAGTTTTGGACATTGTCAGATTCC
TGACAATGTCTGCACCTCCATTTCCATAGGCAGAAAGCTGCTTTTACATC
ATATGGTTGTGATAATATTAAACAATTAAAGTACTCAGCATTGTGCCCTG
GGACTATGTGGCTATAACAAAGGTTGGCTGTTTTGTTTTAACACTGTCTG
TGTTCATTAAAATATTTAATAATGGCAACCATCCTATACATTATTTCCTC
TTAACCAACTATAATGAGATAATTTGTATCATAATANAACTTTTAGAATC
TCAGTAGCTTACAAAAATATTTGTCTGTCATTCGTGCT
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTCCTGTGGTGAAATGGA
GGGCAGAAACAGAAGACTCCCTCCCAAACGTGTGGGCCAAGTAGCTGCGA
ATGCACATGAGTGAAAGTCAGCAGCCAGAACAGAAGGAGACTGTCTCAAA
CTAGGCCGAAGGCAAAGACTGACACCCAAGCTTGTCTTCTGTCCTTCATA
TCAGCACCATGGCATATGTGTGCTTGACTTATCACCAAGTGGACAACTTA
GGGAGCATGTATGTACACAACAAGTTACATACACAGAAAACACTTTGAGT
TGCTAAGCATTTTCTTTATCTTCCTCACCCTCCCGCTCCCAAATCTAAGT
GTGGTTCCAGCCTCTTCATGCACCACACCAAAGGAAGTATTCTCTATTCT
TGCCCTGTGCATTGGGGTCATACTACATGCAGGGCTCAGGAAAGAAACAA
TGACAGCCATTGAATGATTACTATATGTCAGACCTAGTCTGAGCACTTTA
TACATGTTAGGATATGAAAATCAACAAATCTACATCTTTGACATTATGCT
GGTTTTACAACTTGTACTTTACAGATTGGAAAACTGGAACTCAAAACAGT
TAAGAAACTTCTGTGAATGTTACAGAAAGCAGATAAGCTAGCAATTAAAT
GTAGGCAGGACATCTCTGACCAGCATCCTGTTGCTTCCTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_b11.b1 MSMg01no317_b11.b1 CHROMAT_FILE:
MSMg01no317_b11.b1 PHD_FILE: MSMg01no317_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:02 2005
         (311 letters)



>mm_chr10_106549706_106550416
          Length = 711

 Score =  580 bits (300), Expect = e-170
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttggacattgtcagattcctgacaatgtctgcacctccatttccataggcagaaag 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttggacattgtcagactcctgacaatgtctgcacctccatttccataggcagaaag 260

                                                                       
Query: 61  ctgcttttacatcatatggttgtgataatattaaacaattaaagtactcagcattgtgcc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtttttacatcatatggttgtgataatattaaacaattaaagtactcagcattgtgcc 320

                                                                       
Query: 121 ctgggactatgtggctataacaaaggttggctgttttgttttaacactgtctgtgttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggactatgtggctataacaaaggttggctgttttgttttaacactgtctgtgttcat 380

                                                                       
Query: 181 taaaatatttaataatggcaaccatcctatacattatttcctcttaaccaactataatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatatttaataatggcaaccatcctatacattatttcctcttaaccaactataatga 440

                                                                       
Query: 241 gataatttgtatcataatanaacttttagaatctcagtagcttacaaaaatatttgtctg 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataatttgtatcataataaaacttttagaatctcagtagcttacaaaaatatttgtctg 500

                      
Query: 301 tcattcgtgct 311
           |||||||||||
Sbjct: 501 tcattcgtgct 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)