BAC Information

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BAC

Clone NameMSMg01-317K19
Chromosome10 (Build37)
Map Location 82,754,761 - 82,755,016
singlet/doubletsinglet
Overlap geneSlc41a2
Upstream geneEG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
Downstream geneD10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K19.T7 (MSMg01no317_k19.b1)MSMg01-317K19.TJ (MSMg01no317_k19.g1)
ACCAG437678AG437679
length725727
length of high quality
(start - end)
347 (375 - 721)259 (373 - 631)
definitionCHROMAT_FILE: MSMg01no317_k19.b1 PHD_FILE: MSMg01no317_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:43 2005CHROMAT_FILE: MSMg01no317_k19.g1 PHD_FILE: MSMg01no317_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAACCCGCGG
AATTCGTGGTACTTCCGCCTCAATTTCTCAAGTGGTGATCTCACACAGGA
TTGTACCACACCCAACCAACGCGCCTGTGGCTTTTTGTCTGGCTTCCTTC
ACGTAGCCAGACTGTTTTCAAAGCTCATTCATGGTGTAATTAGTGTGGGT
CGGCTCTCTACTTTCTTGGAGCTGAATGACTGATAATGCGGTGTGTGCCC
ATTCACCAGTTAATGAAATGGCATTCATTGCTTTTCACCTTTTAGCCATC
GGATATGATGCTGCTAGAACTTCTGTGTATGTGTGTTTTAAATGCCCCAA
ACCTTAGGTGTGTATTTGCTTGGTACTTAACATTTTTGAGAAACTTTCAG
ACTTTAATCAAAGTTGTTGCTACGTTTTATACTCCACCAGTTTATGCGGG
CTGCGTTTTCCTTAAACCGCCAACGACCGACAAGTTATTTTTTACTGTTT
TTTTTTAAGCTATCCTAGTGGTTTTCCTGGTTTTAATTTGCATCTCAGAC
AAGAGATTAAAACGCCTTTTGTATGCTTATTGGCCATATGTGTATCTGTT
TTGGAGAGATTTCTGTTTAGACCCTCCACTCCTATTTTTGCTGTCTTATT
TGATTTTTTTGTTATTGTTGCTGAGATGTCTTATTCATTATAGGAAAAAT
TCTAGATTCTTGACTGCCACTGGCN
TGAAGTGGGAGGCCTGGCGGCCGCCTGGTTTCGAAGCGGGGGNGAACNAN
AGAAGGTGACGGGACCACGCGCACAANAAANACNNNGCCGNGAAGACGGG
CNGCACAGAGTTAGAGCCAANATNCCCTTTNACAGGGAGGNNNCAAACAN
GAAGGANGAAAGGGCAGAGAGCCAAGCTAAGGCCAGAGNGAACGGNANGA
CCTGTAGGTGGAACCCCACCCCTTTCCCAGATGTAGACTCTGATTTTCTC
ACACACACCATCATCAATGTCCTTCAGTTAGAACTTAGCCATCCACTCCC
ACACACCTCATGATTGTATTTTCCCCGGANNGNCCCANTNACNAAAAGAA
CACGGACTTAGTTCCTCACAAACCTTTTAAACTGTAGAAGTCAAAGTCCT
ACATGGGGCCACTGCAAAAGACACTTGAGCATGACTCTCTGGAGCAGCCC
GCACCCGAGTCTTAGGTGGATACTGTCCTTCTGCTCCATGCTCTCCCCTG
ATGCCAAAGCATAGGTCTACGTGAAAACGTTCCCTTGATAAGCTCCAACT
CTGCTTTGGAAAGAAATCCGGAAACAAGAAAGTGGAAACAGCAGCAACAG
CTGTGTTGTTACTCCAGTTGCTGGCTCGGTGATAGATTCTGATAGCTTCT
TTTATTGTTGTACATGTAACTAGTGCCCTGTGAATGGGTACAAGCCTTTG
CACTTCCCCAGCAAAGAGTGCCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k19.g1 MSMg01no317_k19.g1 CHROMAT_FILE:
MSMg01no317_k19.g1 PHD_FILE: MSMg01no317_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:43 2005
         (259 letters)



>mm_chr10_82754558_82755216
          Length = 659

 Score =  464 bits (240), Expect = e-135
 Identities = 252/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   tttaaactgtagaagtcaaagtcctacatggggccactgcaaaagacacttgagcatgac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttaaactgtagaagtcaaagtcctacatggggccactgcaaaagacacttgagcatgac 263

                                                                       
Query: 64  tctctggagcagcccgcacccgagtcttaggtggatactgtccttctgctccatgctctc 123
           |||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct: 264 tctctggagcagcccgcacccgcgtcttaggtgcatactgtccttctgctccctgctctc 323

                                                                       
Query: 124 ccctgatgccaaagcataggtctacgtgaaaacgttcccttgataagctccaactctgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctgatgccaaagcataggtctacgtgaaaacgttcccttgataagctccaactctgct 383

                                                                       
Query: 184 ttggaaagaaatccggaaacaagaaagtggaaacagcagcaacagctgtgttgttactcc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 ttggaaagaaatccggaaacaagaaagtggaaacagcagcaacagctgtgttgttacttc 443

                           
Query: 244 agttgctggctcggtg 259
           ||||||||||||||||
Sbjct: 444 agttgctggctcggtg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)