Query= MSMg01no317_m24.b1 MSMg01no317_m24.b1 CHROMAT_FILE:
MSMg01no317_m24.b1 PHD_FILE: MSMg01no317_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
(488 letters)
>mm_chr10_126281529_126282421
Length = 893
Score = 857 bits (443), Expect = 0.0
Identities = 474/487 (97%), Gaps = 5/487 (1%)
Strand = Plus / Plus
Query: 6 gaattccttctctctctgccagaagtcccaccttctatttcctgcctgagctaataggcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttctctctctgccagaagtcccaccttctatttcctgcctgagctaataggcc 265
Query: 66 atcagcaggagatgctgccacataatacgtaagccattctctctacaccacatttggtat 125
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 266 atcagcaggagatgctgccacataatgcataagccattctctctacaccacatttggtat 325
Query: 126 ggtttcttttaacttctattatttttaattatgtgtctgtgaggaggctttgggcagtcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 326 ggtttcttttaacttctattatttttaattatgtgtctgtgaggaggctttggccagtcc 385
Query: 186 tgaagctcgcggtacacgaagttttgcgccccctagaggagggtgctgagaactccgctc 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggaagctcgcggtacacgaagttttgcgccccctagaggagggtgctgagaactccgctc 445
Query: 246 cgtgctcgcatttgttcttttctaacccgcatttgttctttttaaagactcacttggccc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cgtgctcgcatttgttcttttctaacccgcatttgttctttttaaagactcacttggccc 505
Query: 306 acttcacagttcggattaggcaggatttcagagtcaacgtctcctcctccttctgctcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 acttcacagttcggattaggcaggatttcagagtcaacgtctcctcctcctactgctcct 565
Query: 366 cctcctcacccttaaatatggtttttcattttctcccggggaggaatgttcaggaacaat 425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cctcctcatttttaaatatggtttttcattttctcccggggaggaatgttcaggaacaat 625
Query: 426 atgtacgcatctgacccaaaggggggggggggggg-----agtaacttggatgtatacat 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 626 atgtacgcatctgacccaaaggggggggggggggggagggagtaacttggatgtatacat 685
Query: 481 ttcacta 487
|||||||
Sbjct: 686 ttcacta 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 893
Length adjustment: 10
Effective length of query: 478
Effective length of database: 883
Effective search space: 422074
Effective search space used: 422074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_m24.g1 MSMg01no317_m24.g1 CHROMAT_FILE:
MSMg01no317_m24.g1 PHD_FILE: MSMg01no317_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
(651 letters)
>mm_chr10_126384944_126385994
Length = 1051
Score = 495 bits (256), Expect = e-144
Identities = 303/322 (94%), Gaps = 7/322 (2%)
Strand = Plus / Minus
Query: 335 ccaaagacgatttggcgggaatgggcccctcccccttctttataaccccgtgttccgaat 394
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 ccaaagatgatttggtgggaatgggcccctcccccttctttataaccccgtgttccgaat 992
Query: 395 attaaaattgagctttgatcaggatcttgtcttagctccatctttctcgcgccacctaga 454
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 991 attaaaattgagctttgatcaggatgttgtcttagctccgtctttctcgcgccacctaga 932
Query: 455 ttccctc-----ttttcttccagattccaagatgccttccaggctcgaacccagacatgt 509
||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 931 ttccctccagaa--ttcttccagattccaagatgctttccaggctcgaacccggacatgt 874
Query: 510 gagccgctggcctgccccaacacttggtatccctgcactgtcaaggccatgaacactgaa 569
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 873 gagccgctggcctgccccaacacttggtatccctgcattgtcaaggccaggaacactgaa 814
Query: 570 gtcactcttcatctgtctctgcgtaggcaatcacacctggaagacagttgaggcagttgt 629
||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct: 813 gtcactcctcatctgtctctgcataggcgaccacacctggaagacagttgaggcagttgt 754
Query: 630 aaacactaaaagctttgaccca 651
||||||||||||||||||||||
Sbjct: 753 aaacactaaaagctttgaccca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
