BAC Information

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BAC

Clone NameMSMg01-317N22
Chromosome10 (Build37)
Map Location 37,026,874 - 37,027,215
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317N22.T7 (MSMg01no317_n22.b1)MSMg01-317N22.TJ (MSMg01no317_n22.g1)
ACCAG437820AG437821
length737743
length of high quality
(start - end)
167 (454 - 620)343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no317_n22.b1 PHD_FILE: MSMg01no317_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:56 2005CHROMAT_FILE: MSMg01no317_n22.g1 PHD_FILE: MSMg01no317_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTTGCGGCGCTAAACGATCACTAATTCCAAGCCCGCACGGAANG
CNCACCATAACCNAACGGAGGGGAGAGAAGCACCNGAAAAAAGGCNCAAC
ANCCNNAANCANCAGGGCACANGCAAANCAAAACAACCCGGAGAGNCCAC
CNCACACCAGNCAGAAGGGCNAAGAACAAAAANNCAGGGGACAGCAGAAG
CNGGCGNGGANGNGGAGAAAGAGGAACACNCCNCCANGGNNGGTTTTTTT
GCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGNTCCTCAGAAAA
CTGGANATAGTTTTTTTCTTTTANCCAGCAANACCNCNCCNGGGCAGANA
NCCAGATTTTTTTTCACCCCCCCCCCCCCACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATCCCACCCAAAATCTGGAAGGAACCCGGATGGCCC
TCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGACAAGCGCGAATCAGCCCTTTTTTTTTTA
TTTCAAGATATCAGACACAATTTCCTAAACACATGAAACTCAAGAAAAAT
GAAAACCGAAGTGTGAACTCTATGCCCCTCCTTAATT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGTATGCTTCTATCAAAATGTCA
GTTTCTGGTCCTAGGAACACAGATTCTAATTGTCTAGGAGCCCAATCTTA
TCAAGGGGTTGTGCTTTATCTAAATCTTTGATATCCTTTCTTTAGCTTAC
TCAAAGAAATTCTTATCTCCAACTTGGAATCCTTTCTACTATTTGACCCT
TCCATCTTCATTACCATCTATTGGGCAAACTAAGCTAGGGAAGTTGATGA
GTCAGAGTCTCAGCTTTGGCTTATTTTCTTGTAAGAGCACACAGAATAAA
TAGGGGCACTTTCCCTATCTTTCACCATGAACCAGGCAGCACATGGTACA
TGTTGGTGTGTAAAAGACCCCACCACCATAGCCTTGGGACTTTTCAGTGC
TTGGCTTCCACACAGATACTAAAGAAAAGCAAACAAGCCTTATGATGGGT
GTGACAACTGATGCCTCTAATCCCAGATAGGCAGGAGTATCAGGAGTTCA
AGGACAGACACAGCAACATAGTAACTTTGAAGCTAGCCTATGCTACATGA
GGCACTGTTTAACCTAACCTAGCCAGTCTAAAACAAAAGCTAAGTTAGAC
TTAAAGAAGTTCTCAGAAACTCAAGTTTAGGAAATTGAGGTGCACTCAAA
CAATAAAACTATTGACAGAATCCTGTCTTACATTTCAAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_n22.g1 MSMg01no317_n22.g1 CHROMAT_FILE:
MSMg01no317_n22.g1 PHD_FILE: MSMg01no317_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:56 2005
         (343 letters)



>mm_chr10_37026674_37027416
          Length = 743

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtatgcttctatcaaaatgtcagtttctggtcctaggaacacagattctaattgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtatgcttctatcaaaatgtcagtttctggtcctaggaacacagattctaattgtct 260

                                                                       
Query: 61  aggagcccaatcttatcaaggggttgtgctttatctaaatctttgatatcctttctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagcccaatcttatcaaggggttgtgctttatctaaatctttgatatcctttctttag 320

                                                                       
Query: 121 cttactcaaagaaattcttatctccaacttggaatcctttctactatttgacccttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttactcaaagaaattcttatctccaacttggaatcctttctactatttgacccttccat 380

                                                                       
Query: 181 cttcattaccatctattgggcaaactaagctagggaagttgatgagtcagagtctcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcattaccatctattgggcaaactaagctagggaagttgatgagtcagagtctcagct 440

                                                                       
Query: 241 ttggcttattttcttgtaagagcacacagaataaataggggcactttccctatctttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcttattttcttgtaagagcacacagaataaataggggcactttccctatctttcac 500

                                                     
Query: 301 catgaaccaggcagcacatggtacatgttggtgtgtaaaaga 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaaccaggcagcacatggtacatgttggtgtgtaaaaga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)