BAC Information

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BAC

Clone NameMSMg01-318B12
Chromosome10 (Build37)
Map Location 93,221,144 - 93,221,681
singlet/doubletsinglet
Overlap genenone
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338
Downstream geneLOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B12.T7 (MSMg01no318_b12.b1)MSMg01-318B12.TJ (MSMg01no318_b12.g1)
ACCAG437985AG437986
length771764
length of high quality
(start - end)
540 (51 - 590)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no318_b12.b1 PHD_FILE: MSMg01no318_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:12 2005CHROMAT_FILE: MSMg01no318_b12.g1 PHD_FILE: MSMg01no318_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATACGCG
GAATTCAATGCCCTTTTCTCGTCTTCTAGGGCACCTGCATGCATGCAGTT
CACATACATAAATATAAGCAAAACACACTTATACATAAGATAAAAATAAA
TGTATTTTTGAAAAGTTTTAGTCAGGGCTGGAGAGATGATACAGCAGTTA
AGAGCCCTTGTGGTTTGCTCATGCAGAGGATCTGGGTTCCATTTCCAGCA
CTCCCATATCTCACAACCATCAGTAACTAGGAACTCTCGTTCCAGGAGAT
CCACCCTCCTCGTCTGGTCTCCACAGACACCATTCAAGCACTTGGTACAC
ACGTAAACAAAATGCTAATGCACATAAGTGTGTGTGTGTGTGTGTGTGTC
TGTATCTGTCTGTCTGTCTCTCCCCCCCCCCCAATCTGTCTGTCTGTGTG
TGTCTGTGTGTGTCTGTGTCTGTCTGTCTGTGTGTGTGTCTGTCTGTCTG
TCTGTCTGTCTGTGTCTGTGTATGTCTGTCTGTCTGTCTGGGTGTGTCTG
GGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCATC
TAATTCTATCTATTACTTCTTTCATTCTTTCTTTATTCCTTTCTTTTCCT
CTATATTTAGATAAATATACTATTTTTTTATATATGTTACTTTATATATA
ATGCATTAACCCAAATCTACATAATTTTTTATTGATCTAAAACCTCTTCT
TTTTGTCCTTTTATATGTCGT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTCGACATCAGAGCTGGTAGCTAAATCTGGTCAA
ACACCAATGGGTTGGAGACCACCCTAAGGAAGAAGTCTATTTATTGCTGT
TTTGCTTCCACCCATAAATTAGTGCCATAGACTCTTTTCTCTGCAACAAT
CAGCAGTTGATGCATGACAGGTCAAAGTGCTCAAAGTGTTTACTGAGTAC
TCAGGACTAATTAGGACATTTATATCAGTATCCTCTCTCCAGGACTCAGA
GAACGTCTCAGAGGGAGAAAGAATGTAAGATCCGGAGGATGGGGAGGAGT
GTGTTAGATGATGTCTTCAGGACATGATATAGACATTGTACCCATGAACT
CACCGCAACTATAATTTCCTACACACCGCCAAAATTCTAACGGGCAACAT
TAACTGGACTCAGTGGGTTATTCAGCAACAAAAGAAGAAGAGGATATAAA
AAGGGAAGGGGACAAGTTTGGGGTGCTGGGGAGACAGGAGGGAGGAGAAG
GTATTCCTGTGATCTACATGCATTGTTTATGTATATGAAATTATCAAAGA
GTAAATGGAAGGGTTTTTTTTTTTTTAATGAAAGAAATGCAACAAATAGG
TTGGTTGGCTGCCCAGAGATTTCAGTTTGGCTGCTACGTTCTGGTGATAA
CATTTATAAACCACTTGTCCATTATTAGAGACCTTCACCTCTCTTGTGGT
CAAAATCTGTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b12.b1 MSMg01no318_b12.b1 CHROMAT_FILE:
MSMg01no318_b12.b1 PHD_FILE: MSMg01no318_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:12 2005
         (540 letters)



>mm_chr10_93220944_93221883
          Length = 940

 Score =  951 bits (492), Expect = 0.0
 Identities = 526/548 (95%), Gaps = 18/548 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcaatgcccttttctcgtcttctagggcacctgcatgcatgcagttcacatacata 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcaatgcccttttctagtcttctagggcacctgcatgcatgcagttcacatacata 260

                                                                       
Query: 61  aatataagcaaaacacacttatacataagataaaaataaatgtatttttgaaaagtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatataagcaaaacacacttatacataagataaaaataaatgtatttttgaaaagtttta 320

                                                                       
Query: 121 gtcagggctggagagatgatacagcagttaagagcccttgtggtttgctcatgcagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagggctggagagatgatacagcagttaagagcccttgtggtttgctcatgcagagga 380

                                                                       
Query: 181 tctgggttccatttccagcactcccatatctcacaaccatcagtaactaggaactctcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgggttccatttccagcactcccatatctcacaaccatcagtaactaggaactctcgt 440

                                                                       
Query: 241 tccaggagatccaccctcctcgtctggtctccacagacaccattcaagcacttggtacac 300
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 441 tccaggagatccaccctcctcgtctggtctccacagacaccaggcaagcacttggtacac 500

                                                                       
Query: 301 acgtaaacaaaatgctaatgcacataagtgtgtgtgtgtgtgtgtgtgtctgtatctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgtaaacaaaatgctaatgcacataagtgtgtgtgtgtgtgtgtgtgtctgtatctgtc 560

                                                                       
Query: 361 tgtctgtctct--------cccccccccccaatctgtctgtctgtgtgtgtctgtgtgtg 412
           |||||||||||        |           |||||||||||||||||||||||||||||
Sbjct: 561 tgtctgtctctgtgtgtgtct----------atctgtctgtctgtgtgtgtctgtgtgtg 610

                                                                       
Query: 413 tctgtgtctgtctgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtgtctgtgta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctgtgtctgtctgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtgtctgtgta 670

                                                                       
Query: 473 tgtctgtctgtctgtctgggtgtgtctgggtgtgtctgtgtgtgtgtgtgtgtgtgtgtg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgtctgtctgtctgtctgggtgtgtctgggtgtgtctgtgtgtgtgtgtgtgtgtgtgtg 730

                   
Query: 533 tgtgtgtg 540
           ||||||||
Sbjct: 731 tgtgtgtg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)