BAC Information

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BAC

Clone NameMSMg01-318B22
Chromosome10 (Build37)
Map Location 50,359,403 - 50,517,976
singlet/doubletdoublet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B22.T7 (MSMg01no318_b22.b1)MSMg01-318B22.TJ (MSMg01no318_b22.g1)
ACCAG438005AG438006
length750743
length of high quality
(start - end)		701 (50 - 750)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no318_b22.b1 PHD_FILE: MSMg01no318_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:14 2005CHROMAT_FILE: MSMg01no318_b22.g1 PHD_FILE: MSMg01no318_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:14 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(50,517,281 - 50,517,976)(50,359,403 - 50,360,069)
sequence
NNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCCAGATTCCATATATCAGAGAAACAAGTCTTTCTGAATTTT
GCCTAATTTGCTTTCTGTAAGAAAGGTATAGGATATGCAAATACATTTTT
GTTATCTGACCCAAAGTGATGAATATTTACATCTGTGTTATTATTTGAGA
AGACACCAGAGACATGCTAGAGACATGGGTCATTGGGAAAGAGGGCTTGC
TGTTCTTCCACAAAGGACTCAAGTTTGGTTTCCAGTACCCATGCCAGGTA
CTGGGTCTAATCTCTAATATGGGGGAAAGAAAGAAAGAAAAAAGAATGAG
AAAAAAATAGCTATCTAATACCACTGGAAATATCTTAAAAGAGAAGCTCA
CAGTCCTTTTATTGAACTGTTTTTCTTTGGCATATATAAAATAGGAGTAT
AAGAAAGTATAAACTATGAATCCAAGGAGAACAACACTTAGCATGTAGCA
CCAGAGATTAAATCTGCTGACATCTTGAGTTCCTCATGCTCTAGGATAGA
GCAGAAATAATTTTCTGTTATTTACTGGTCACCCACTTCATGATATTTTG
GTATACCAGTCTGAAAAGACTAAAATATTATAGCTGATTTTATTTACTTT
ATATTCTATGTTTTACTTATTTAAATACCAATCCTTATTGTAGGCTTCCT
TTCGATTGTCCTTGTTTTTCCTTCCAGCTTTTTAAAACAGAAAGTTGGGT


NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTCAGTGTAGTCTCATTTGAA
AAAAATTGTTTTTACTGTATTAATAATTGGATGAATTATCACTCTGAAAT
TTAGTTTTTTTTGCACTAAACTCAGTTCAGGCTTTATAAAGAACTCCAGA
AGTTTTAACTGCAGACTGTTTTTTTTTTTTTTTTTTTAAACTGCCACTGC
TTCTAAAAGAAAGAGACTTTATCAGCAGAAATTTCTCTGTATCTTAAAGG
AAGTTAAGGAGCCACTGCTGTAATTTAAGAACACTAAGGTGGTGTTCACA
TTCTCCATGCTGGCCTACACTGTTGAATTGGAGGCAGCTTCTTGGTGCAC
TGTGCAGCCTCAGTGCATAAGTAGCGCACCTAACCATTTTGTCGTGTAGT
GAATAAATGCCTACTAAAAAATAAACCAGGGAGCCAGTGTGTTTATATTG
TTAAACTTGTAAACCGTGTTTCATTGATAACGTTTCAGTTCTCTCAGAAG
GTTGATAGCTTTGGAAATGTGTATTTTGAATGCACAGAAGTTAACCAACT
ACCATTGTGTTTGGAATTAAAGAATATACCTTTCAATAAAATTATTGAAA
TGTTAAAAGAAAAGATTGTTAGAAACTTGGACATTTGGAATTTAGCACTT
TGACCTTTTTTATGGGGCTCTGAGCTCTTCAGATAGAGAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b22.b1 MSMg01no318_b22.b1 CHROMAT_FILE:
MSMg01no318_b22.b1 PHD_FILE: MSMg01no318_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:14 2005
         (701 letters)



>mm_chr10_50517076_50518176
          Length = 1101

 Score = 1307 bits (676), Expect = 0.0
 Identities = 691/696 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccagattccatatatcagagaaacaagtctttctgaattttgcctaatttgcttt 65
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattccagattccatatataagagaaacaagtctttctgaattttgcctaatttgcttt 842

                                                                       
Query: 66  ctgtaagaaaggtataggatatgcaaatacatttttgttatctgacccaaagtgatgaat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctgtaagaaaggtataggatatgcaaatacatttttgttatctgacccaaagtgatgaat 782

                                                                       
Query: 126 atttacatctgtgttattatttgagaagacaccagagacatgctagagacatgggtcatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atttacatctgtgttattatttgagaagacaccagagacatgctagagacatgggtcatt 722

                                                                       
Query: 186 gggaaagagggcttgctgttcttccacaaaggactcaagtttggtttccagtacccatgc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gggaaagagggcttgctgttcttccacaaaggactcaagtttggtttccagtacccatgc 662

                                                                       
Query: 246 caggtactgggtctaatctctaatatgggggaaagaaagaaagaaaaaagaatgagaaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caggtactgggtctaatctctaatatgggggaaagaaagaaagaaaaaagaatgagaaaa 602

                                                                       
Query: 306 aaatagctatctaataccactggaaatatcttaaaagagaagctcacagtccttttattg 365
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaatagctatctcataccactggaaatatcttaaaagagaagctcacagtccttttattg 542

                                                                       
Query: 366 aactgtttttctttggcatatataaaataggagtataagaaagtataaactatgaatcca 425
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aactgtttttctttggtatatataaaataggagtataagaaagtataaactatgaatcca 482

                                                                       
Query: 426 aggagaacaacacttagcatgtagcaccagagattaaatctgctgacatcttgagttcct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggagaacaacacttagcatgtagcaccagagattaaatctgctgacatcttgagttcct 422

                                                                       
Query: 486 catgctctaggatagagcagaaataattttctgttatttactggtcacccacttcatgat 545
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 catgctctaggatagagcagaaataattttctgttatttactggtcacccgcttcatgat 362

                                                                       
Query: 546 attttggtataccagtctgaaaagactaaaatattatagctgattttatttactttatat 605
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attttggtatatcagtctgaaaagactaaaatattatagctgattttatttactttatat 302

                                                                       
Query: 606 tctatgttttacttatttaaataccaatccttattgtaggcttcctttcgattgtccttg 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctatgttttacttatttaaataccaatccttattgtaggcttcctttcgattgtccttg 242

                                               
Query: 666 tttttccttccagctttttaaaacagaaagttgggt 701
           ||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttttccttccagctttttaaaacagaaagttgggt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no318_b22.g1 MSMg01no318_b22.g1 CHROMAT_FILE:
MSMg01no318_b22.g1 PHD_FILE: MSMg01no318_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:14 2005
         (667 letters)



>mm_chr10_50359203_50360269
          Length = 1067

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctcagtgtagtctcatttgaaaaaaattgtttttactgtattaataattggatgaat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctcagtttagtctcatttgaaaaaaattgtttttactgtattaataattggatgaat 260

                                                                       
Query: 61  tatcactctgaaatttagttttttttgcactaaactcagttcaggctttataaagaactc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tatcactctgaaatttagttttttttgcactaaattcagttcaggctttataaagaactc 320

                                                                       
Query: 121 cagaagttttaactgcagactgtttttttttttttttttttaaactgccactgcttctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagttttaactgcagactgtttttttttttttttttttaaactgccactgcttctaa 380

                                                                       
Query: 181 aagaaagagactttatcagcagaaatttctctgtatcttaaaggaagttaaggagccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaagagactttatcagcagaaatttctctgtatcttaaaggaagttaaggagccact 440

                                                                       
Query: 241 gctgtaatttaagaacactaaggtggtgttcacattctccatgctggcctacactgttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtaatttaagaacactaaggtggtgttcacattctccatgctggcctacactgttga 500

                                                                       
Query: 301 attggaggcagcttcttggtgcactgtgcagcctcagtgcataagtagcgcacctaacca 360
           ||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||
Sbjct: 501 attggaggcagcttcttggtgcactatgcagcctcagtgcataagtagtggatctaacca 560

                                                                       
Query: 361 ttttgtcgtgtagtgaataaatgcctactaaaaaataaaccagggagccagtgtgtttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtcgtgtagtgaataaatgcctactaaaaaataaaccagggagccagtgtgtttat 620

                                                                       
Query: 421 attgttaaacttgtaaaccgtgtttcattgataacgtttcagttctctcagaaggttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgttaaacttgtaaaccgtgtttcattgataacgtttcagttctctcagaaggttgat 680

                                                                       
Query: 481 agctttggaaatgtgtattttgaatgcacagaagttaaccaactaccattgtgtttggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctttggaaatgtgtattttgaatgcacagaagttaaccaactaccattgtgtttggaa 740

                                                                       
Query: 541 ttaaagaatatacctttcaataaaattattgaaatgttaaaagaaaagattgttagaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaagaatatacctttcaataaaattattgaaatgttaaaagaaaagattgttagaaac 800

                                                                       
Query: 601 ttggacatttggaatttagcactttgaccttttttatggggctctgagctcttcagatag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttggacatttggaatttagcactttgaccttttttatggggctctgagctcttcagatag 860

                  
Query: 661 agagcag 667
           |||||||
Sbjct: 861 agagcag 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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