BAC Information

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BAC

Clone NameMSMg01-318I12
Chromosome10 (Build37)
Map Location 72,455,356 - 72,455,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040505, Zwint
Downstream geneLOC432471, LOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318I12.T7 (MSMg01no318_i12.b1)MSMg01-318I12.TJ (MSMg01no318_i12.g1)
ACCAG438307AG438308
length7201,487
length of high quality
(start - end)
302 (72 - 373)---
definitionCHROMAT_FILE: MSMg01no318_i12.b1 PHD_FILE: MSMg01no318_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:44 2005CHROMAT_FILE: MSMg01no318_i12.g1 PHD_FILE: MSMg01no318_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCTGTGTCACAGAGCACAGCAGGTCCAGCAGAGATGCTGAGCGT
CATTGGGAGGTCACTGAGACATGCACATATGATGAGATAGGAGCTAGGTA
AGAACTGCAAACAAAAGTCATGAGAGGTCCTATAATCTCGACTTTCTGTG
TAAGGTATTATATATATATATAAACATGTATGAATATATGTATATATATA
TGCATATATATCATTCATTTATTAACTTAAATTATACAATATTTTGACCT
GAAGTCAGAAATAAAAATCACTGTTTGCATTCCACAGAATGTTTTATCTT
TCAGCCCCAAATTCCTTTATTCTCATCCTTCCAATCAATGTCTTCCTTCT
CCAGACTACATAGATCCCCCCCCCCTCTCCCTTGAAGCATATTTTTTTTA
ACAGAATGATTCTGGTTGGAGGAGCAATGTCTGAGTCAGGTAGGAAGGTT
TTGGAGAAGTAAAGCTTTTTCCAAAGTCAGCTCCGAAAAGTAAATAAAGC
TAAAGTATTATAGGATATCGTAACAGTCTTTATAAAGAGGTCAGATCCCT
AATACAGATGAGACCTTTGAATAGTCTGGAATCAGTCAAGCTTATAATAC
CTACACCAAAGAGTTAAGCACTGTTGCAATCTTGCTCTGAACTTTTCGCC
CCAGTTGAAATCATGTGTAT
AACGAATTGTGTCGCTGGCATCAGAGCAGTACTCGAGCTATATGTATATT
TATCTCCACAACAAAATAAGGCGCAGGCGNCTACAGACACAGATTTCTAT
TCTATTTTCTCTACAAATACACNCAACTATAATATGCCGCAGAATAAATA
ATAAATACTCGCAGCGAACAATTGATCCACATATAATAGTTTAGCCCAGC
TAACACTGTAAGTACAATATAAAACAGTACAAAATATATTATTCCCTGTA
TCGCACGAATATATCGATATATCTACAGAACCGGTGATTTGCCGGCACCG
GTATATATCATATTATATANGTATAACCGTGCCGCTTACGACCCACGCGC
AGAACTTTCAATATGCAATCCTCTGTANAACCTCCGCCTTCGTCGACTCT
TCTTTGGCAGATATTAATCATATAATACTCGCGACGTACGCACACGCAGG
TGCATTTCACGACTAACTCTAAAGTATGTATACAGGCTCACCCCGATATG
CACACGCGTTATAAAATGGTTAGTTACTCATTGTCCGTATGTCACGCACG
CGAATACNCGAGCTGACCGTCATGATCTCTTCAGCAGTTATTTACAGTAC
GATTTTTATTTTGATTCTATCCTGCGTACGCGTAGATGCTGTGATCTGAT
GTGATGCCACACTAACGGCGACGCGCCAGACGTTATCTGTGTATGCGCTA
TGATCTCGTCCACAGCTCTCCTCATTATTATTCGCTGCTCAGCCTCACAC
CTATATATCTTATTGTCAGTGTGTCGTTGTCGGCTGCTCACATACTGTTG
TATTTTTCGTACACTTCCCATCTCTCTCTATTTATGTTGGTACTGNATAT
ATGAAGCGTGAAGAACAATACGCGCGACGGAAGACTAGACACGGTCGTCT
TATCATCTCCTATCCAGTCTATATAATTGCGAGCGCGTATTATTCGCGTA
CTTTATATATTTCATCCTTCGCATGACCATATATTATTACGGCGCGCGTA
ATCATATACTAGCGTCGCACCNGTATCTATTAGTATATGNTGCAGTGAAN
TTCGTGGTTATACATCGCAGTATACATCTCGNCACACCGTACTCATCACC
TTGTGTCTCTCCGGCCTCACTCCGTACATATCGTTTCTCGCTTATATATA
TATCGCAGTCGTGGACCGCTCGCTCGTTCCGTCGTATGAATGTGACTGTG
CAGCACAGTTNTATAATCGTATAGCGATATGTATGCACATATACGTCTCG
CGATCGCGGCGTGGTATACAGACTGATTACAGCACAATACTATAAATACT
GCTGATAGCACTGGTACTATTATGCGTGTGTGATGAATCTCCCATAAACG
CTGTAGTCGATATATCTGAAATGCGCANTAATTCATAAATGTCGCGAATA
CATCTATGAGTCGTGCCGCGATCTGTCTACACGCTATACATGTTCGNGTA
TACGCCAGTCTTCCCATATTATGANCAACACTATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_i12.b1 MSMg01no318_i12.b1 CHROMAT_FILE:
MSMg01no318_i12.b1 PHD_FILE: MSMg01no318_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:44 2005
         (302 letters)



>mm_chr10_72454966_72455667
          Length = 702

 Score =  557 bits (288), Expect = e-163
 Identities = 295/298 (98%), Gaps = 2/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   caggtccagcagagatgctgagcgtcattgggaggtcactgagacatgcacatatgatga 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 686 caggtccagcagagatgctgagcgtcattgggaggtcactgagacatgtacatatgatga 627

                                                                       
Query: 65  gataggagctaggtaagaactgcaaacaaaagtcatgagaggtcctataatctcgacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gataggagctaggtaagaactgcaaacaaaagtcatgagaggtcctataatctcgacttt 567

                                                                       
Query: 125 ctgtgtaaggtattatatatatatataaacatgtatgaatatatgtatatatatatgcat 184
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgtgtaaggtat--tatatatatataaacatgtatgaatatatgtatatatatatgcat 509

                                                                       
Query: 185 atatatcattcatttattaacttaaattatacaatattttgacctgaagtcagaaataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atatatcattcatttattaacttaaattatacaatattttgacctgaagtcagaaataaa 449

                                                                     
Query: 245 aatcactgtttgcattccacagaatgttttatctttcagccccaaattcctttattct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatcactgtttgcattccacagaatgttttatctttcagccccaaattcctttattct 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)