BAC Information

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BAC

Clone NameMSMg01-318I16
Chromosome10 (Build37)
Map Location 113,033,597 - 113,033,946
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042639, 4921506J03Rik, LOC100042655
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318I16.T7 (MSMg01no318_i16.b1)MSMg01-318I16.TJ (MSMg01no318_i16.g1)
ACCAG438314AG438315
length738742
length of high quality
(start - end)
352 (61 - 412)296 (67 - 362)
definitionCHROMAT_FILE: MSMg01no318_i16.b1 PHD_FILE: MSMg01no318_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:44 2005CHROMAT_FILE: MSMg01no318_i16.g1 PHD_FILE: MSMg01no318_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCATG
TGATATTCGACACTGTGTTTGAAAGTATGTTGCTGAAAATCAAGAGATGA
CAAGAGTTTCTAGGCACAGCAGAACTGGGAATAAGATCAGAAACAGATTC
TACTTTAGAGCATTCCATATGGCAGACCCCATGATGAACCTGCTGCTGGA
TTTACAACCTCTGCAACTGTCAGACAAGGCAATACCATTACATGGAAAGA
GGATGTTTGTCAAGACAAATAGTTTGTGGGTCCTTTGTTCTAACAGTGTT
GACAAACAAATATAATATGCTTATAAAGTGAATTTTAATAGTGGATTAAT
ACATATACATATTCTAGTCTGTTTTCTAGCCCTATTTAGTCTCAAGTCAA
GCTCAGAGCACCCCACACACTTCTGTTAGTTTCCAGAACTACCCAAGCCA
TATAAAAGCCAAAACATGTATTTACCATAAAACAAGAACATGTTTTGTTC
CTAAGTTATAATAAATATTAGGCTCAGAAAATATGCAAAACTTAATAACC
TACCTGATCAATCAAGTATAACAAAGATATCTGTGTGAGAACCTAAAGAG
ATTCAGTGTGCCTATTTAAAATGACTGATGAATAAAAGTAATTTGTATTC
GCCAAAGATAATTGTTGTCTAGGTGGCTTACTGCTGAATAAGCTCACACA
TTTAGGTCTTCTGAATTCTAGATGGCTGCTTCCACTCA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCAGACGACATCTCCCATTACATCTAGTCAGCA
GTCTACGAAGGAGAAGCTGAGAATTGAAAAACTCAAATCCTGCTGCTTAG
AGCTCAGAAAACCCTGAAGAAAAGGAGGCAGAAAGTAGAGTAAGAGTCAG
AAGGGCTGGAGAACAGCAGGAGAACGAGACCCTCTGAATCAACTGAGCAA
GGCTCATAAGAACTCACAGAGACCGAAGCAGAAAGTACAGGGTTAGCCCA
GGTCTGTGCCATGTGTTCTGCATGTGCATCATAAACTTCAGCTTAGTAAT
TTTTTGGTACTCCCGAGGCTGTGAACCAGTGGATCCCTGATTCTTGTGTC
TTCTTTGTGCCCCCACCCCCTATGCATTTGCCGTGTCTAAATTTGATGTG
ATTTCTCTTTGTTTTGTACTATCATATTTTATTATGTTATGTTTTCTTGT
TAATGTTGAGAGGAATTTTCTAATAAGAGAATGAAAGGAGGTGGATCTGA
ATAAAAGAGGAGGTGAATAGAAACTGGGAAGAGTAGAAGGAAGGTAAAAT
ATAATCAGGATATATTGTATGAGAAAATAATCTATTTTCTCTGAAATGAG
AAAAATAACTAAGTTTAAGATTCATGCAGAATAAAGATTTTTTCTCATTA
TAGTGACATGTATCTCATAACCTGCACCTTGAATATCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_i16.b1 MSMg01no318_i16.b1 CHROMAT_FILE:
MSMg01no318_i16.b1 PHD_FILE: MSMg01no318_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:44 2005
         (352 letters)



>mm_chr10_113033397_113034148
          Length = 752

 Score =  578 bits (299), Expect = e-169
 Identities = 338/351 (96%), Gaps = 2/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgtgtttgaaagtatgttgctgaaaatcaagagatgacaagagtttctaggcacagc 60
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cactgtgtctgaaattatgttgctgaaaatcaagagatgacaagagtttctaggcacagc 491

                                                                       
Query: 61  agaactgggaataagatcagaaacagattctactttagagcattccatatggcagacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaactgggaataagatcagaaacagattctactttagagcattccatatggcagacccc 431

                                                                       
Query: 121 atgatgaacctgctgctggatttacaacctctgcaactgtcagacaaggcaataccatta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 430 atgatgaacctgctgctggatttacaacctctgcaactgtcagaaaaggcaatgccatta 371

                                                                       
Query: 181 catggaaagaggatgtttgtcaagacaaatagtttgtgggtcctttgttctaacagtgtt 240
           ||  |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 370 cacagaaagaggatatttgtcaagccaaatagtttgtgggacctttgttctaacagtgtt 311

                                                                       
Query: 241 -gacaaacaaatataatatgcttataaagtgaattttaatagtggattaatacatataca 299
            | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 310 ag-caaacaaatataataagcttataaagtgaattttaatagtggattaatatatataca 252

                                                              
Query: 300 tattctagtctgttttctagccctatttagtctcaagtcaagctcagagca 350
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tattctagtctgttttctagccctatttagtctcaagtcaagctcagagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)