BAC Information

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BAC

Clone NameMSMg01-319G17
Chromosome10 (Build37)
Map Location 66,064,694 - 66,064,933
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G17.T7 (MSMg01no319_g17.b1)MSMg01-319G17.TJ (MSMg01no319_g17.g1)
ACCAG438948AG438949
length746783
length of high quality
(start - end)
253 (433 - 685)241 (122 - 362)
definitionCHROMAT_FILE: MSMg01no319_g17.b1 PHD_FILE: MSMg01no319_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:45 2005CHROMAT_FILE: MSMg01no319_g17.g1 PHD_FILE: MSMg01no319_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGACAATTTCCAAAATAATATAAGCAATATACAGCAAACCAGTAGCCAA
CATCAAAGTAAATTGAGACCAACTAGAAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAATATAGTACTTGA
AGTCCTAGCCAGAACAATTTGACAACAAAAGGAGATCAAGGGGATACAAA
TTGGAAAGAAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTA
TATATAAGTGACCCAAAAAATTCCACCAGAGAGCTCCTAAACCTGATGAA
CAGTTTCAGTGTATTATCTGGATCCACCACTCACTCAAAAAAATCAGTGG
CCTTTCTCTATACAACCCACAAACGGGATGAGAAAGAAATAAGGGAAACA
ATACCCTTCACAATAGTCACAACTAATATAAAATACCTTGGTGTGACTAA
GGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAATAAA
TTGAAGATCTCAGAAAATGGAAAGATCTCCCATGCTCAGGGATTGGCAGG
ATCAATATAGTAAAAATGGCTATCCTGCCAAAAGCAATCTACAGATTCAT
TGCAATCCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGG
CAATTTGCAAATTAATCTGGAATAACAAAAAACAAGGGATAGCAAN
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGAAATATCAGTCTCAGAGTTGTTATTTTGTTAATTTTGGC
ATGGGTGGAAAATCTTGTCGCTACACATACTATAAAGGACCAGTGTGAAT
AGTTTGTTTTTCTTTTCTATTTTTTTCTGTAAGGGGATAGTGAGTAAATA
TTTTGATTCTTTAGGCCAATTGGTCTTTGTTATTCTATGCAATGATGGTT
TTTTTATTCATGTGGAAACAGATCACAAACCACAACTGGCTTTGTTACAA
TAAAGCTTTATGAGTATTGTTTATATGAATCCAACATGATTTTTATGTGT
GTGTGTGTGTGTGTTTGTGCCCCCCCCCCCCCCCTTTTNTTTTTCCCTTT
GTATCGGTGGGCCCCCCCCCCTTGTAAAAAAAAAATAAAATTTCGCATGG
GTGTTGCTTCCCCTTTTTTTTTTTCTTTTTTTTCGTTCATTCCCTCTCCC
ACGACTTCGCCTTCTTCCTATTATTTCTTTCCCTTTCTCTCCTCCTTTAT
AATCATTTTTTTTTTTCTATTTTATTTTGTTTTTCCTTCATTTAATTCTT
TTTTCTAAGCCTCTTTTTTCTATTGTCTTTATTAGATAGCTCCATTGTAC
TTCTCTCTCATTTTTTTTCCGCCTCCCCTCTCTTTTTTATACCCTACTTA
CTTATTTATATCGTATCTTTCACACATTAATTATAAGATTTGCTTTCGCT
TTCGACTTATCCTTTCGCTATTATTTCCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g17.g1 MSMg01no319_g17.g1 CHROMAT_FILE:
MSMg01no319_g17.g1 PHD_FILE: MSMg01no319_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:45 2005
         (241 letters)



>mm_chr10_66064494_66065133
          Length = 640

 Score =  443 bits (229), Expect = e-129
 Identities = 238/243 (97%), Gaps = 5/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacacatactataaaggaccagtgtgaatagtttgtttttcttttctatttttttctgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacacatactataaaggaccagtgtgaatagtttgtttttcttttctatttttttctgta 381

                                                                       
Query: 61  aggggatagtgagtaaatattttgattctttaggccaattggtctttgttattctatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggggatagtgagtaaatattttgattctttaggccaattggtctttgttattctatgca 321

                                                                       
Query: 121 atgatggtttttttattcatgtggaaacagatcacaaaccacaactggctttgttacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgatggtttttttattcatgtggaaacagatcacaaaccacaactggctttgttacaat 261

                                                                       
Query: 181 aaagctttatgagtatt--gtttatatgaatccaacatgatttttatgtgtgtgtgtgtg 238
           |||||||||||||||||  |   |||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagctttatgagtattgag---atatgaatccaacatgatttttatgtgtgtgtgtgtg 204

              
Query: 239 tgt 241
           |||
Sbjct: 203 tgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)