BAC Information

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BAC

Clone NameMSMg01-320B12
Chromosome10 (Build37)
Map Location 92,175,543 - 92,175,763
singlet/doubletsinglet
Overlap geneNedd1
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
Downstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320B12.T7 (MSMg01no320_b12.b1)MSMg01-320B12.TJ (MSMg01no320_b12.g1)
ACCAG439423AG439424
length757814
length of high quality
(start - end)
226 (133 - 358)221 (187 - 407)
definitionCHROMAT_FILE: MSMg01no320_b12.b1 PHD_FILE: MSMg01no320_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005CHROMAT_FILE: MSMg01no320_b12.g1 PHD_FILE: MSMg01no320_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT
GTTCAACATCCTTAATTTTTCCCCAAAAGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTTTTGGAGGATCCAGCAATACCTCTCCTGGG
CATATATTTAGATGAGTCCCCCGTCGNCCCCCCNGAANATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAAAAAAAAAATGGAGGGGGCCTGGAT
GCCCCTCTTTATAGGAATGCATACAGAACATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAACAAGAATGAATTTCTTGAAATTCCTAGCCA
CAAGGATGGACCTGTAAGGCCATCTCCCTGAATTGAGGTAACACTTTTCT
CTTAGAAACTCTCACTATATGTTTTTCCTCTGATAATTGCATTTTATGCC
CCTATCCCTCGGATTACCCAAGACTTACTTATTTTTTTTTGCCTATCACA
CATGTAAACCCTAATAACTATTGGTTTACCTGACGCTTGTGGACGCTTTA
GTGCCCN
CCCCCCATCCTTTATNCCCCACTTTGTGAATATCATGATTTTCTNNNNNC
CCTACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGATGTGAAAACAAAAG
GTTGTCTGCATTACGAATTTTTTAGCACAAGAAAAGAGTAGAAGGTTGCC
ATATAGGAATCAAGCAAGCGAAAGCCAAAAACTCTGACAATCTGGTCCAA
GACTCAGCTCTTTCAGTTTGGTAAGATACTCCCTATACAAAATAGGCATA
TCCCTCTAAGCAGTGTGAATTCACATAGTGCACAACTGAAAGACTGACCA
AAGAGCAAGGTGTGTATTTGCACTTACCGCCACTGTGGAGTGGAGAGAAT
ACATATTCCTTGTATANCTAATTTGCCCGAGACTGTCCGCTGCTTTGCAG
TCACTGAAGTAAACAGTAAGCACTCGAAAAAAAAAAAAAAAAGGAACGAG
GGGGGGGGAGCTAACTATTTCATTAGTAGCAACTCTTCAGTTTCCTATTT
TATTCTAAAAAGAGTTTAAATACACTTCAAAGTTTAGCTAGGCATAAAAT
CTATAATATTTCCAAAGGTGCCTCTAAGCTACTATAAGATTCCATCTTAA
TTTTATTTTAATAGAGAAGATGTAATAAAAACAGATAACCAATGGTCTGG
TTTATTCTACACATAATTCCCACGAAGGGGTGCAGGAAACTGAAAGAAAA
TATTATTGGGTCACCGAAATGTGCTATTTAATATTTAGAATAATGTATTA
ACCTCGGCTTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_b12.g1 MSMg01no320_b12.g1 CHROMAT_FILE:
MSMg01no320_b12.g1 PHD_FILE: MSMg01no320_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:32 2005
         (221 letters)



>mm_chr10_92175343_92175963
          Length = 621

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaaggttgccatataggaatcaagcaagcgaaagccaaaaactctgacaatctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagaaggttgccatataggaatcaagcaagcgaaagccaaaaactctgacaatctggt 260

                                                                       
Query: 61  ccaagactcagctctttcagtttggtaagatactccctatacaaaataggcatatccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagactcagctctttcagtttggtaagatactccctatacaaaataggcatatccctc 320

                                                                       
Query: 121 taagcagtgtgaattcacatagtgcacaactgaaagactgaccaaagagcaaggtgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcagtgtgaattcacatagtgcacaactgaaagactgaccaaagagcaaggtgtgta 380

                                                    
Query: 181 tttgcacttaccgccactgtggagtggagagaatacatatt 221
           |||||||  ||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcacagaccgccactgtggagtggagagaatacatatt 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)