BAC Information

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BAC

Clone NameMSMg01-320J18
Chromosome10 (Build37)
Map Location 80,584,440 - 80,617,397
singlet/doubletdoublet
Overlap geneMap2k2, Zbtb7a, Pias4
Upstream geneStk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3
Downstream geneEef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J18.T7 (MSMg01no320_j18.b1)MSMg01-320J18.TJ (MSMg01no320_j18.g1)
ACCAG439797AG439798
length744752
length of high quality
(start - end)
277 (379 - 655)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no320_j18.b1 PHD_FILE: MSMg01no320_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:09 2005CHROMAT_FILE: MSMg01no320_j18.g1 PHD_FILE: MSMg01no320_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,584,440 - 80,584,716)(80,617,111 - 80,617,397)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAACACGGATCCGCGGAA
TTCCTTCCTAGCAACACACACTCCAGTGAGGTGAGGGACTGGCTCACATC
CACAGGCACAGAAAGTTGCCCCTAAGACAGACTAATTGGAACCCAGTACC
CTTGTGTCCAAGGCTGAGGCAGGATTGCCTTGAGACACATAGTAATTTCC
AGAACAGTCTTAGCTACAGTGTGAGACCCTGACTCAAAAGCAGCCAGAAA
TAGAACAACAACAAATCCAAGCAAGTCTCCAGAGGGAGCCAAAGTCACAT
GTGAATGTGCATGGTTGTGCTCATTGGTGAAGAACACTGACAGAAGATGG
GCTTTGTGGTCTGTTACAGGGCTGCCACTGTTCCTGGCATTGATAGTCCA
GCTCAGCCAGCACTTCTCCCAGGAAGTCTGGAGCCACCATCAACAGGAAG
GGCTTTACCCTGTACCACAGGCATCCCCACCCACTAGATAGTGTTGGTAA
AAGCTGAACCGGAGGAGCCTGGCCAGATGATGGGGTGGCCAGCAATTCCT
GCAGCCACCTAAGTGATCCTTCCCTGTCCTCCACAGCCACCTCCCAAGCT
GCCCAGTGGTGTGTTCAGCTCAGACTTCCAGGAGTTTGTGAATAAATGGT
GAGATGGGTCCATGGGATGGGTGGGGCAGCCTCACACTCCAGCTGTGGGT
TTCTGGGCTATGGTGTGCAGTTAGGGGTCAAAGTATTTCCCAAA
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGCACACAGGGATGCCAGGC
ATAGTACACCTTGTGCCTGGGCCCACACCTGTGCACTCTGGTGCCTACAG
GCTGCTGTCGAAGATCCTGAGTGAGTGTGAGGGCGCGGATGAGATTGAGT
TCCTGGCGGAAGGCTCATGGCGTCCAATCCGTGCAGAGAAGGAGCCAAGC
TGCAGCCCACAGGGCCCCATCCTGGTGCTAGGTGAGTCCTGCACACAGCA
CCCACCACACCAGCCAGCCAGGCCGGTGGCTGAGCACTGTTGCCCTGTCC
CCACAGGCACCTCTTTATTCAATGGGCTCGCACCAGCCTCCAGCACCCCC
GGTATAGGCAGTGGCCTGAGTGGCCCAGGCAGCGCCGGCAGCGGTGCAGG
GGCAGCAGGCAGCCTGGAGAATGGCAAGACGGGAGCCGACGTGGTGGACC
TCACACTGGACAGCTCGTCGTCCTCGGAAGATGATGATGAGGACGAGGAC
GACGATGAGGACGAGGACGAGGGCCCCCGGCCGAAGCGCCGCTGCCCGTT
CCAGAAAGGCCTGGTGCCCGCGTGCTGACTCCGCTGCGGGGGCGCTGGAG
GGCGGGAGCCGCACCCGTCCATCATTCCCTCGCCCACCCCTCCCCGGTTC
CCGGCTCCTGTACCTCTGGACTCTCCTCTTGGGGGGATTAAAAAAAGTAA
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j18.b1 MSMg01no320_j18.b1 CHROMAT_FILE:
MSMg01no320_j18.b1 PHD_FILE: MSMg01no320_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:09 2005
         (277 letters)



>mm_chr10_80584240_80584916
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcctggcattgatagtccagctcagccagcacttctcccaggaagtctggagccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcctggcattgatagtccagctcagccagcacttctcccaggaagtctggagccacc 260

                                                                       
Query: 61  atcaacaggaagggctttaccctgtaccacaggcatccccacccactagatagtgttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaacaggaagggctttaccctgtaccacaggcatccccacccactagatagtgttggt 320

                                                                       
Query: 121 aaaagctgaaccggaggagcctggccagatgatggggtggccagcaattcctgcagccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagctgaaccggaggagcctggccagatgatggggtggccagcaattcctgcagccac 380

                                                                       
Query: 181 ctaagtgatccttccctgtcctccacagccacctcccaagctgcccagtggtgtgttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaagtgatccttccctgtcctccacagccacctcccaagctgcccagtggtgtgttcag 440

                                                
Query: 241 ctcagacttccaggagtttgtgaataaatggtgagat 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagacttccaggagtttgtgaataaatggtgagat 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_j18.g1 MSMg01no320_j18.g1 CHROMAT_FILE:
MSMg01no320_j18.g1 PHD_FILE: MSMg01no320_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:09 2005
         (288 letters)



>mm_chr10_80616911_80617598
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccacacctgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccagacctgtgcac 428

                                                                       
Query: 61  tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 368

                                                                       
Query: 121 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 308

                                                                       
Query: 181 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccaccacaccagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccgccacaccagcca 248

                                                          
Query: 241 gccaggccggtggctgagcactgttgccctgtccccacaggcacctc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccaggccggtggctgagcactgttgccctgtccccacaggcacctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)