BAC Information

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BAC

Clone NameMSMg01-320P08
Chromosome10 (Build37)
Map Location 71,431,207 - 71,431,439
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767
Downstream gene1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320P08.T7 (MSMg01no320_p08.b1)MSMg01-320P08.TJ (MSMg01no320_p08.g1)
ACCAG440057AG440058
length747757
length of high quality
(start - end)
234 (125 - 358)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no320_p08.b1 PHD_FILE: MSMg01no320_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:35 2005CHROMAT_FILE: MSMg01no320_p08.g1 PHD_FILE: MSMg01no320_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTTCTTCTGAGCCCCATTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTTGACCTTTTATATATATTGGATATTGGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCACAACACCCTTCTCAATAGTCACAAAT
AATATAAAATATCTTGGCGTGACTGTAAGGAAGTGAAAGATCTGTATGAT
AAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGGATTAACATTGTAAAAATGG
CTATCTTGTTTAAAGCAATCTACAGATTCAATACAATCCCCATCAAAATT
CCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTG
GAATAACAACTAAAAAAGAAAACCTAGGATAGCAAAAACTCTTCTCAAGG
ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC
AGAGCAATTGTGATCAAAACTGCATGGTACTGGTATAATGACAGAAAAGT
AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG
GTCTCTTGATCTTCGACAAGGGAGCTAAAACCATCAAGTGGAAGAAAGAC
AGCATTTTCCACAAATGGTGCTGGCAGAACTGTGTGTTATCATGTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTGAAGGTTGCCTTAGATCTAC
ACATCACTTCTACTTTTTTTTTCAAATGTTTTCAGTTAATCACACACAGT
AGTTGTGATATATAGGCTTATTATTTTGATGCAAAATTATAGTTATTAGG
AAATAGCATAAATTAGTTCTGTGAAAATAGTATACTTAATTTAGATTTAC
TAGAAGCTAATAAATTTTATTTTACTTTTTATTAGTTCTTGAGAAGTTTA
GAGCAGAGTATTTGCACTGTAGTTATTCCTTCCCAACTCTCCCAGGTTTA
TTCAGGCTTCTTCTTCTTTATCCCCTTCTTCCCCATGTTTAATTCATCAA
CTCTGGTTTGCACACTTCTTATTTCACAAGAAAGAAGTCTTTTCTCTGCA
GTGTGATCAACTTATCAGGGGTGGCATTCTCCCTCTTGCAGAAACGGTCA
GTTGTCAGTAGCTCACTAGAAATGGGTGGGAGGTTGTTCCCATGTCCCTT
CTCCTTCCTGGAATTTGGTTGGACTTGAACTTGCATGGAACTTGTGCCAG
CTATCATAACCAATGCGAGTTCCTCTGTGTGGGAGTCACCGAAGGCCTAT
ACTTTCTCTGCTCACTACAATCTCACCTGTCTTCTGGCATGATCTTTGAT
TACCAAAATTAGCGATCACAAGGAAGACATTATAACCCAAATTCGAGAAA
GGTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_p08.g1 MSMg01no320_p08.g1 CHROMAT_FILE:
MSMg01no320_p08.g1 PHD_FILE: MSMg01no320_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:35 2005
         (234 letters)



>mm_chr10_71431007_71431640
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttcagttaatcacacacagtagttgtgatatataggcttattattttgatgcaaaat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttcagttaatcacacacagtaattgtgatatataggcttattattttgatgcaaaat 260

                                                                       
Query: 61  tatagttattaggaaatagcataaattagttctgtgaaaatagtatacttaatttagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagttattaggaaatagcataaattagttctgtgaaaatagtatacttaatttagatt 320

                                                                       
Query: 121 tactagaagctaataaattttattttactttttattagttcttgagaagtttagagcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactagaagctaataaattttattttactttttattagttcttgagaagtttagagcaga 380

                                                                
Query: 181 gtatttgcactgtagttattccttcccaactctcccaggtttattcaggcttc 233
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gtatttgcactgtagttattccttcccaactctcccaggttgattcaggcttc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)