BAC Information

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BAC

Clone NameMSMg01-321N08
Chromosome10 (Build37)
Map Location 56,834,273 - 56,834,635
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N08.T7 (MSMg01no321_n08.b1)MSMg01-321N08.TJ (MSMg01no321_n08.g1)
ACCAG440698AG440699
length747829
length of high quality
(start - end)
367 (47 - 413)95 (69 - 163)
definitionCHROMAT_FILE: MSMg01no321_n08.b1 PHD_FILE: MSMg01no321_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:40 2005CHROMAT_FILE: MSMg01no321_n08.g1 PHD_FILE: MSMg01no321_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATGATGTTTACTGTGAAATAGGAAGTGTCTTAGAAAGTAGCAT
GATCCAACCCTTTATTTTATTAATTTTCAGTGAACCTCTTCATGAGGCCT
GAACCTCTTCATGGTTAAAAATGTATTAATTATAATAGTTGCAAGGATAT
TGCCCACAGAGTAGTAATCATAACGCCTAAAGCATACTAAATTCCACTTT
GCCCACAGACATTTTAATGCTAAAAACAGTATCAATGACTGCAGTACCAG
AAAACAAGTTACTAATTGATAATCATAAGAATCCAACTAATGTGTTTGCT
GAGTGTGAACAGGAAAAGTTGTCACCTTCACAAGTTTCAAAATAGTTTTC
TTTCTTTATAAAGTGTGCATCCCCTCACGCACAAGCATCAAGGTTCTCAC
ATTGTCTCTGTGTATGTTCATTGGTTCATAGTTGAAGCCAGAGCAGAAAA
TGATTTTGATACTATTGTTAATGACCACTTTCTGTTATTGGCAAATGTGG
TTAACCGTATGTCTTCGTCAATTGAAAGGCTGACTGAACAGTCATTTTAG
AATTTTGCCCAGCATAGCTATATAACGTATGTTGATGTGACACCCCCATA
ATATAAAAATTCTGGCGTCTGTGGATACTGGCATGTTGACCTGTTTATTC
TTTATATTATATCCTTTTCCCCCTTGTCCCGCGAAGATGTTTATTTN
NACATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCCGAAAATCTTTATATGAAGCGGAACTAATTCCACCTTAT
TTCTCACTTGGAGCATGCCTGTAAAGTTTCTGAAGTGCATGCAGCATGTG
CATGTGTGTCTCTCTCCTTCTTTATATTCTATTTTCTTACCCCTTTTTTT
TTACTTTACACCTTCCCCCCCTCTTTCTTAATTATCTTTCTCTTTTTATC
TTCCCCCCCACATTTCCTTTTTACTTTCTTTCTCCTATCTCAAATATTTT
TCTACATTCTTCAACCTTTTTTTTTATCCTCCCATTCCCCTTTACCAATT
TAACATCACTCATAACTTTTTTTTTTTCCTCCCCCCCCCCCCCCCCTTTA
TATTTTCATTCTCTTCTATATATTTTTTTTTTCCCCCCCCCCTCTTCAAA
ATATATTTTTTTCTTTTCTCCTCTCTTCCCCTTCTATTTCCTCCTCTCAT
CCTTATCCCCATTCTTTCCTCTCTTCATCCCTATATCCTCAACTTCTTCT
TTTCCCTCCTCTCCCCTATTTTTCTCCCCCTTCCCTTCCTATCTCCTTTT
ATTTCTCATTTACTTTCCCATTCTTCTTACTTCTCTACATTTTCTATTTA
CATTATTTTTACTCACTTTCTTATATACTACTCTACTCCCTCTCTTCACA
AAACCCAATATTTCTTTTTTAATTTTTTCCCTTCCTCTCATTTTTCCTCA
TTTCCCTTCCATCCTACCATACATCCTATCTCTTCCTCCTTTATTTTTTA
CTTCCCCTATCCCCTTCCCTTCCTTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n08.b1 MSMg01no321_n08.b1 CHROMAT_FILE:
MSMg01no321_n08.b1 PHD_FILE: MSMg01no321_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:40 2005
         (367 letters)



>mm_chr10_56834069_56834835
          Length = 767

 Score =  594 bits (307), Expect = e-174
 Identities = 349/363 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgatgtttactgtgaaataggaagtgtcttagaaagtagcatgatccaaccc 64
           ||||||||||||||  | ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 205 gaattcaatgatgtgaaatgtgaaataggaaatgtcttagaaagtagtatgatccaaccc 264

                                                                       
Query: 65  tttattttattaattttcagtgaacctcttcatgaggcctgaacctcttcatggttaaaa 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattttattaattttaagtgaacctcttcatgaggcctgaacctcttcatggttaaaa 324

                                                                       
Query: 125 atgtattaattataatagttgcaaggatattgcccacagagtagtaatcataacgcctaa 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 atttattaattataatagttgcaaggatattgcccacagagtagtaatcataatgcctaa 384

                                                                       
Query: 185 agcatactaaattccactttgcccacagacattttaatgctaaaaacagtatcaatgact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 385 agcatactaaattccactttgcccacagacattttaatgctaaaaacagcatcaatgcct 444

                                                                       
Query: 245 gcagtaccagaaaacaagttactaattgataatcataagaatccaactaatgtgtttgct 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gcagtaccagaaaacaagttactaattgataatcaaaagaatccaactaatgtgtttgct 504

                                                                       
Query: 305 gagtgtgaacaggaaaagttgtcaccttcacaagtttcaaaatagttttctttctttata 364
           |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 505 gagtgtgaacaggaaaagctgtcaccttcagaagtttcaaaatagttttctttctttaga 564

              
Query: 365 aag 367
           |||
Sbjct: 565 aag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)