BAC Information

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BAC

Clone NameMSMg01-322M01
Chromosome10 (Build37)
Map Location 26,206,718 - 26,207,373
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
Downstream geneLOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M01.T7 (MSMg01no322_m01.b1)MSMg01-322M01.TJ (MSMg01no322_m01.g1)
ACCAG441361AG441362
length733732
length of high quality
(start - end)
688 (46 - 733)656 (77 - 732)
definitionCHROMAT_FILE: MSMg01no322_m01.b1 PHD_FILE: MSMg01no322_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:47 2005CHROMAT_FILE: MSMg01no322_m01.g1 PHD_FILE: MSMg01no322_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCACCTCACCTAGGTGTGAGTATGCCTAGTTGTAGGATGCTAT
AGACACTCAGCAAAGAGTTACCTGGCATCTAAATTTTTTAAATTTTATAA
ATAAAAAGCATGGTTTAAATAATGTGCACAGGCATATAATTTTCCCCTTT
TTTGTTTTTTAAGAAGATATTTTTTTAAAGTTTCACAATATCTTGTCCTT
GAGAATTAGAAGGAATCCCAGTAATATGGGTAACATTAAATTGTTGACAA
AATATTTCGAATGCTTGACTGTAATAGCCATTTCCATTATCTGTTTTAAT
CTGATTTGGAACATCAAGCATAAAAAAATAATGTAGGCAATGACTAATTA
CATTTTTAGTTACTTCTCTTGCTAAAGCAGTAGCAACCAGAATGGCTAAA
AATGTCTCAATACTCACATGTACATATTTTATTTTTCTAAAATCATAAAT
ATGAGTACCATCCATTTGCAATAATTGATTAAGTATAAGTCCTCAAGAAT
TAACAACATTATGTGGTACAGGTAGAACTTAAGGACACTTTATAATTTGA
CATGTGCATTCTCTAAAACTACCAAATTGTTATCTCAAGCCATTACTATT
TTGACAATGTAAAGAATGAGATTATATGGCCATTTGTTCTTGTATAAAGC
CTTTAATCTGCCTGGGATACAAATCTGCTATGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAATGTATAACCCTAACCT
ATAAGACATATGGTTAGGTAACAAAAGGAAAACCAACCGTGGAATAATAC
TTACAGAAAGATTCCCTCAAGGAAAAAGGCCTAGAAATGTACAATATGGG
AACCAGGAAAAGGCACTTGTGTACCACCCATACATTTTGAAAACAAGAAG
AGGACCGTGAAAGTTACACTTTCTATGAACTCAGAACCTGACGTCACTTG
ACTGCAGTCGACAGCACTCCCAAGCCTCACCTGGTCCAGTGGAAAATCAG
AACATGTAGAGTTTTACAAGGTGACTGCACTCTGCTCGTTGCCAATGGAC
ACCTGGGTCAAGCCAGGCGATCACTAAAAGAGAAGGAGTTGCGTATCCAA
TTCAATGTATGCTTTTGAGTACCTTCCTGTGAGCCTGGGGCTGTGGGCCG
CCATCTTCTCTTACCACGAGAGCTGAACAGTAAGAAATCTCTCGCAGCAG
AGGAGGAAGCACAGGTCCTTTGGTGTAGAGCTCATAAGCTGAGGCTTCTG
GGAAAGGAGAGACTTCCTGACTTCCTAATTCTTTCTACGCCCCTTGCTAG
CTCTTGTACCTTGGCCAAGTTTGTCCTCTTGGCGTAAGCTCTTCTCTAAA
CCAATATAATTACCTTTCCTGCAATATTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m01.g1 MSMg01no322_m01.g1 CHROMAT_FILE:
MSMg01no322_m01.g1 PHD_FILE: MSMg01no322_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:47 2005
         (656 letters)



>mm_chr10_26206518_26207573
          Length = 1056

 Score = 1222 bits (632), Expect = 0.0
 Identities = 650/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaaatgtataaccctaacctataagacatatggttaggtaacaaaaggaaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaaatgtataaccctaacctataagacatatggttaggtaacaaaaggaaaaccaa 260

                                                                       
Query: 61  ccgtggaataatacttacagaaagattccctcaaggaaaaaggcctagaaatgtacaata 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtggaataatacttacagaaagattccctcaaggaaaaaggcctagaaatgtacaata 320

                                                                       
Query: 121 tgggaaccaggaaaaggcacttgtgtaccacccatacattttgaaaacaagaagaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaaccaggaaaaggcacttgtgtaccacccatacattttgaaaacaagaagaggacc 380

                                                                       
Query: 181 gtgaaagttacactttctatgaactcagaacctgacgtcacttgactgcagtcgacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaaagttacactttctatgaactcagaacctgacgtcacttgactgcagtcgacagca 440

                                                                       
Query: 241 ctcccaagcctcacctggtccagtggaaaatcagaacatgtagagttttacaaggtgact 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccaagcttcacctggtccagtggaaaatcagaacatgtagagttttacaaggtgact 500

                                                                       
Query: 301 gcactctgctcgttgccaatggacacctgggtcaagccaggcgatcactaaaagagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 gcactctgctcgttgccaatggacacctgggtcaagccaggcgattagtaaaagagaagg 560

                                                                       
Query: 361 agttgcgtatccaattcaatgtatgcttttgagtaccttcctgtgagcctggggctgtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttgcgtatccaattcaatgtatgcttttgagtaccttcctgtgagcctggggctgtgg 620

                                                                       
Query: 421 gccgccatcttctcttaccacgagagctgaacagtaagaaatctctcgcagcagaggagg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccgccatcttctcttaccatgagagctgaacagtaagaaatctctcgcagcagaggagg 680

                                                                       
Query: 481 aagcacaggtcctttggtgtagagctcataagctgaggcttctgggaaaggagagacttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcacaggtcctttggtgtagagctcataagctgaggcttctgggaaaggagagacttc 740

                                                                       
Query: 541 ctgacttcctaattctttctacgccccttgctagctcttgtaccttggccaagtttgtcc 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgacttcctaattctttctacaccccttgctagctcttgtaccttggccaagtttgtcc 800

                                                                   
Query: 601 tcttggcgtaagctcttctctaaaccaatataattacctttcctgcaatatttgca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcttggcgtaagctcttctctaaaccaatataattacctttcctgcaatatttgca 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)