BAC Information

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BAC

Clone NameMSMg01-323H12
Chromosome10 (Build37)
Map Location 79,495,897 - 79,558,249
singlet/doubletdoublet
Overlap genePolr2e, Gpx4, Sbno2
Upstream geneOlfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1
Downstream geneStk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323H12.T7 (MSMg01no323_h12.b1)MSMg01-323H12.TJ (MSMg01no323_h12.g1)
ACCAG441882AG441883
length1,3431,293
length of high quality
(start - end)		709 (86 - 794)663 (95 - 757)
definitionCHROMAT_FILE: MSMg01no323_h12.b1 PHD_FILE: MSMg01no323_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:02 2005CHROMAT_FILE: MSMg01no323_h12.g1 PHD_FILE: MSMg01no323_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,495,897 - 79,496,605)(79,557,599 - 79,558,249)
sequence
NNNCCGGAATTTNNNNNCCATTGGGCGCTAAGACTCCATAGGGAGAGGAT
CCGCGGAATTCTCACCCATCCTGCTATCCCTAAAGGGGAAGGGGCCTTTC
TTCCTGGGGTGGGGCTTCCTCTGGGGGGCTTCCTGGTGAAGGGTCAGCCA
GAAGCCTGCAGCACACCACAGGCACAGATAAAATGCCTGAGTGCAGGGTG
ACTCAGAGATGGTCAGGACAGAGTTGTGGTAAGCACTTCAGGGGCCGCCC
TGATCTTGGTAAACAAAATGTCTTGGCCCCAGGCCAGGACCCAGACATGA
AGGTAGTCTGGACTCAGTTCTTCTTCAAGAGAGGAACTAACACATGGTTG
GTTGCCAGTGAATGTATTTGTTAACCTCATAATCATACAATTTGGCTTCT
TCTTTTGAAGTTGTTTGTTTTTATGCCGGGTCTATGTGGCCCTGGGTCGT
CTGGAACTCACAGAGCCCCCTCCCCAAGTGCTCAGATTAGAGATGGCTCA
TGCACTGCCTTGCACTATTTTGGAATTGAAACAAGCCCTCCCCCCCTCCC
GCCCCCATGACTGACCCATTGAGCCACACCCTGATCCTGACTTACTTGAA
AGTCACGAGAACCTTGCCCAGAGGCTGAGAAGTGGTGTGCCCTATTCAGT
AAGTCAAACAGTATAGGTCATAAAAAGCCACCAAGGTGGGGCTGCTAGGA
AGTTGACAGTGCAGCGCGGAGCATANAACCCAGGGCTTCCCAATGCTAGA
CGGGTGTTCAAGTCACACCCACCAAAGGCTGAGGGACACAGTGGACTCCC
TGGCTCTTCTTGTGTGACTTCAGAGAGGGTGAACTTTAACTAAGCTTACT
CTCGGCCCTTAACCTGTGGTGACCAAAGAACTAAGTGAGACCCTTTCAGG
TCCCCTGTCTCCATTCCTCCTATGCCCCCACCGAGGCTGGGTCCCTTGGA
GGAAAAAATTTTATACCTTCCCTGGTCCTGCCGAAAAGGACCCCCAACCT
CAAGGGAGGGATTTGAAAAGGAAAATTCTCTCCTCTTCTATATCTGGGGA
TTTTTTCCTTGAAAAAACAGATATTTTCCTCTAAGTATAAATCTTCTCCA
CTCCACCAGAGGGGAAACTGCTGGGNTCCCTAAAACTACATACTCTCTTT
CCTTTTGGTGTCACTCTTTCTGAAGTATATTACTCTTAAATATAGTCCTT
TGTTTTTTTCTCTTCAAATATCNATATGTATCTATCCTCTTGCTCCTTGT
CTCACATTTCTTTATANNGTTATTTATTGTTAATAATGTCATTTTTTTTT
CTTCTTCATTATGCCTTCTTTTCTTTCTTTTCCTCACTATTAT

NNNNAATGTTTTTTTNNNNGGCATGGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAACCAGCTCCAGG
TAGCTGAGACTGTCCCAAATAAGAAAGCACAGCAGCTTACCCTGTGTCCC
ACCCTTGGCTCTGTGAGGGCAAGGGTTGCAGACAGTTGTCTGTCTCTGTC
CTTCTCTGTGCCCCCACTGGCCTCCAGTCCTCCCTGCACTCCCTGGGTCA
AGTCATAGGACAGCAGCTAGTGGTCTCCCCTGATCTCTGTTCCCAACTGG
GCTTTCTTCTAGCCTCGTGGTCACTAGCTCAGTCTCCCCCAACCCCTGTC
AGTGGGTCAGACTAGTGCCCCTGAATCCCCCAGCCTGTGCCCTCTCCTGT
GAGCAGGGCCATAGCCAGTTGAGGGGATGCCAGGCACTGCCCATCAGGCC
TGACATTTTAAGCTACTTCCCACGTGGTCATCCTTGTCGCCAGCTCTGCC
AAGGGCTATGGGGTCTCCAGCCCTCCACCCTCACTCCTGAGCATACCGCT
GTCACTCTATCCCAGCACATGGTTCCCTGGACTAGGCCTCTGTCCAGCCA
GACCAGAAAGTTTTGCAAGGGAGGGTGGGCAGTTCAGGCTCCAGGCTCCT
CCCTGCCTCTGGCAATCTTGTCTTCTAATATTCCCTCCTGCCTGTCTCTG
TCTTTCAAAAGATCCTGGAAGGCAAAGGTGCCAAGCCTCCCACACTGTGA
CCTCCAGAGTAGTCCTGGAGAAGGGCTATGGTTGTCCTTTGACCATTGTC
CCGAGGACCCATGTACAGCCAGGAGTGAGGGCTTTCCAGCCACGCTAGAG
CCAGCTCAGCTGCTACACTTTCTTTTTCTAAATGGGGGGGGGGGGGGCGC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_h12.b1 MSMg01no323_h12.b1 CHROMAT_FILE:
MSMg01no323_h12.b1 PHD_FILE: MSMg01no323_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:02 2005
         (709 letters)



>mm_chr10_79495697_79496805
          Length = 1109

 Score = 1334 bits (690), Expect = 0.0
 Identities = 704/709 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaaggggcctttcttcctggggtggggcttcctctggggggcttcctggtgaagggtc 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 201 gggaaggggcctttcttcctggggtggggctttctctggggggcttcctgttgaagggtc 260

                                                                       
Query: 61  agccagaagcctgcagcacaccacaggcacagataaaatgcctgagtgcagggtgactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagaagcctgcagcacaccacaggcacagataaaatgcctgagtgcagggtgactca 320

                                                                       
Query: 121 gagatggtcaggacagagttgtggtaagcacttcaggggccgccctgatcttggtaaaca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gagatggtcaggacagagttgtggtaagcacttcaggggctgccctgatcttggtaaaca 380

                                                                       
Query: 181 aaatgtcttggccccaggccaggacccagacatgaaggtagtctggactcagttcttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgtcttggccccaggccaggacccagacatgaaggtagtctggactcagttcttctt 440

                                                                       
Query: 241 caagagaggaactaacacatggttggttgccagtgaatgtatttgttaacctcataatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagagaggaactaacacatggttggttgccagtgaatgtatttgttaacctcataatca 500

                                                                       
Query: 301 tacaatttggcttcttcttttgaagttgtttgtttttatgccgggtctatgtggccctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaatttggcttcttcttttgaagttgtttgtttttatgccgggtctatgtggccctgg 560

                                                                       
Query: 361 gtcgtctggaactcacagagccccctccccaagtgctcagattagagatggctcatgcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcgtctggaactcacagagccccctccccaagtgctcagattagagatggctcatgcac 620

                                                                       
Query: 421 tgccttgcactattttggaattgaaacaagccctccccccctcccgcccccatgactgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttgcactattttggaattgaaacaagccctccccccctcccgcccccatgactgac 680

                                                                       
Query: 481 ccattgagccacaccctgatcctgacttacttgaaagtcacgagaaccttgcccagaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccattgagccacaccctgatcctgacttacttgaaagtcacgagaaccttgcccagaggc 740

                                                                       
Query: 541 tgagaagtggtgtgccctattcagtaagtcaaacagtataggtcataaaaagccaccaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagaagtggtgtgccctattcagtaagtcaaacagtataggtcataaaaagccaccaag 800

                                                                       
Query: 601 gtggggctgctaggaagttgacagtgcagcgcggagcatanaacccagggcttcccaatg 660
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 801 gtggggctgctaggaagttgacagtgcagcgctgagcataaaacccagggcttcccaatg 860

                                                            
Query: 661 ctagacgggtgttcaagtcacacccaccaaaggctgagggacacagtgg 709
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctagacgggtgttcaagtcacacccaccaaaggctgagggacacagtgg 909


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no323_h12.g1 MSMg01no323_h12.g1 CHROMAT_FILE:
MSMg01no323_h12.g1 PHD_FILE: MSMg01no323_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:03 2005
         (663 letters)



>mm_chr10_79557399_79558461
          Length = 1063

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggtagctgagactgtcccaaataagaaagcacagcagcttaccctgtgtcccaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 851 tccaggtagctgagactgtcccaaataagaaagcacagcagcttagcctgtgtcccaccc 792

                                                                       
Query: 61  ttggctctgtgagggcaagggttgcagacagttgtctgtctctgtccttctctgtgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttggctctgtgagggcaagggttgcagacagttgtctgtctctgtccttctctgtgcccc 732

                                                                       
Query: 121 cactggcctccagtcctccctgcactccctgggtcaagtcataggacagcagctagtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cactggcctccagtcctccctgcactccctgggtcaagtcataggacagcagctagtggt 672

                                                                       
Query: 181 ctcccctgatctctgttcccaactgggctttcttctagcctcgtggtcactagctcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctcccctgatctctgttcccaactgggctttcttctagcctcgtggtcactagctcagtc 612

                                                                       
Query: 241 tcccccaacccctgtcagtgggtcagactagtgcccctgaatcccccagcctgtgccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcccccaacccctgtcagtgggtcagactagtgcccctgaatcccccagcctgtgccctc 552

                                                                       
Query: 301 tcctgtgagcagggccatagccagttgaggggatgccaggcactgcccatcaggcctgac 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcctgtgagcagggccatggccagttgaggggatgccaggcactgcccatcaggcctgac 492

                                                                       
Query: 361 attttaagctacttcccacgtggtcatccttgtcgccagctctgccaagggctatggggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attttaagctacttcccacgtggtcatccttgtcgccagctctgccaagggctatggggt 432

                                                                       
Query: 421 ctccagccctccaccctcactcctgagcataccgctgtcactctatcccagcacatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctccagccctccaccctcactcctgagcataccgctgtcactctatcccagcacatggtt 372

                                                                       
Query: 481 ccctggactaggcctctgtccagccagaccagaaagttttgcaagggagggtgggcagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccctggactaggcctctgtccagccagaccagaaagttttgcaagggagggtgggcagtt 312

                                                                       
Query: 541 caggctccaggctcctccctgcctctggcaatcttgtcttctaatattccctcctgcctg 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagactccaggctcctccctgcctctggcaatcttgtcttctaatattccctcctgcctg 252

                                                              
Query: 601 tctctgtctttcaaaagatcctggaaggcaaaggtgccaagcctcccacac 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctctgtctttcaaaagatcctggaaggcaaaggtgccaagcctcccacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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