BAC Information

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BAC

Clone NameMSMg01-323L10
Chromosome10 (Build37)
Map Location 26,839,917 - 26,840,493
singlet/doubletsinglet
Overlap geneLama2
Upstream geneSamd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323L10.T7 (MSMg01no323_l10.b1)MSMg01-323L10.TJ (MSMg01no323_l10.g1)
ACCAG442059
length1,3221,319
length of high quality
(start - end)
---577 (144 - 720)
definitionCHROMAT_FILE: MSMg01no323_l10.b1 PHD_FILE: MSMg01no323_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:34 2005CHROMAT_FILE: MSMg01no323_l10.g1 PHD_FILE: MSMg01no323_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGTGGTAGTTNNNNGGCAGCGCGCGGCACACGAATCACAATGGGTG
TGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTNTNNCAATAACCCCCAAAAAAAGACTCAAAAAAACTTGATTTT
TTCGGGGTCGGACCGGGGACGAAAACCCCNNAGATTGNCGGGAAANAAAA
ACTCCCCCCTTTTCTNANAGNNTACNCNNNANAAAANNNNNGGNNNNGNN
NNGNGGNGNGNNNCNNCCNCCNNGGGGNAGGGGGNNCCNGGNNNNNNNNN
NNNNNNNNNNGNNNNNNNNNNT
NNNCCTGTTTTTTNNNNAAAGCATGGAGGCTGGGGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXNGACCTTATATATCCCATGAAA
TCTCACACAGAACACCAACCTATCCTGTAATTTCTTGCCCCACCAGACAT
CATTTGTAGAGTACTCGACACACCTGCAGAATCCTAATATTCCAAAGAGC
ACAGCTAGAAACCCTGTTTACTGCATTGTACACACAGACTCCTGGGATGG
GCTTTATTGCTGAAGGCATCTTTCTAGCCTAATCTATTTCCCTAGACCGA
TGGATGTTTCCTCCTTTAAAACTTGAATATGGCAAGGCTGTAGAAATGTA
TGGGCAGGTCCATGTTCAGTGAGCTCACAGCCTAGAGTATTTCCATTCTC
GGATTCTAAAGCTGATATATATGACTGGTCAGCAAGGCAAAGGTGCTTAC
ATGTTCAGCGACATGATGCTGAATCATATATCTCCTACTTTTTCCTCTTA
CCTGAAGAGAGATTGAGTCTGTTCACTGTTTATGTGCCCTCCATTACACA
CAATACCTTAATAACTATGTTCTCAAAAGGAGTTTAGCCTGGAGAACAAT
GACAATTTTTCCTTTTCATTGCTGACTGCCCTGGTACCTGCCTCTGGTTC
TCAGGAGGAGCAACCTGGGCAAGGTGAAAAGACCAAGTGTTGGATACCAG
TTTTGCATGTGACATTCTTGTTACTTAATTGACAAAATTTCCCTTATCTC
CTCCCCATAGCCATAAATGAAAAAGCTGTAAAACTAAATGAAACCTTTAG
AAATCACGATAAAACAGCCCAGAGAAACTTGGAGGAGCTTCTAAAGAAAA
TCGACCGGATGGCTGAAGAACTGAGAAAAAAAGATCCTCTAACCCCAAGG
AAATTTGTGGAGATGAACTTCTGGGATAAAATTTCGCGGGGCTTTTCTTT
TTAAGGGAAAAGATAAATATGTTTCCTAGATTTGTCCCCAAGCGAAGGGA
GGAGGATTTTCTGTTCTTCATTACCCCCACCACTTGGTTTTAATCACCTA
AATAGGTTGCTCTTTAATATAAATAAAACAACCAGGGTGGGCGTTTTTTT
TTTATAATAAACAACGTTATTCTGATTTTGTTGAATTTTTAATTTTCACG
CCCAATACCAATTATATAACTTAACCAGCTTCTTTTAAACTTTGTAATTC
CTCCCATTATATACCGCTCTCCTCATTCTACTAAATCGAATATTCTTTAT
AGCTACGGCGCGANAAACCAAATAAACCGGCTACTCTATTAACAAATTCC
CTTCTCGNAAACGAAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_l10.g1 MSMg01no323_l10.g1 CHROMAT_FILE:
MSMg01no323_l10.g1 PHD_FILE: MSMg01no323_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:35 2005
         (577 letters)



>mm_chr10_26839717_26840693
          Length = 977

 Score = 1007 bits (521), Expect = 0.0
 Identities = 563/581 (96%), Gaps = 8/581 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacatcatttgtagagtactcgacacacctgcagaatcctaatattccaaagagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cagacatcatttgtagagtactcgacacacctgcagaatcctaatattccaaagagcaca 718

                                                                       
Query: 61  gctagaaaccctgtttactgcattgtacacacagactcctgggatgggctttattgctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gctagaaaccctgtttactgcattgtacacacagactcctgggatgggctttattgctga 658

                                                                       
Query: 121 aggcatctttctagcctaatc----tatttccctagaccgatggatgtttcctcctttaa 176
           |||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||
Sbjct: 657 aggcatctttctagcctaatctatttatttccctagaccgatgaatgtttcctcctttaa 598

                                                                       
Query: 177 aacttgaatatggcaaggctgtagaaatgtatgggcaggtccatgttcagtgagctcaca 236
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 597 aacttgaatatggcaaggctgtagaaatgtatgggcaggtccatgtttagtgagctcaca 538

                                                                       
Query: 237 gcctagagtatttccattctcggattctaaagctgatatatatgactggtcagcaaggca 296
           ||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||
Sbjct: 537 gcctagagtatttcctttctcggattctaaagctg----atatgactggtcagcaaggca 482

                                                                       
Query: 297 aaggtgcttacatgttcagcgacatgatgctgaatcatatatctcctactttttcctctt 356
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 481 aaggagcttacatgttcagcgacatgatgttgaatcatatatctcctactttttcctctt 422

                                                                       
Query: 357 acctgaagagagattgagtctgttcactgtttatgtgccctccattacacacaatacctt 416
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 acctgaagagagattgagtctgttcattgtttatgtgccctccattacacacaatacctt 362

                                                                       
Query: 417 aataactatgttctcaaaaggagtttagcctggagaacaatgacaatttttccttttcat 476
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 361 aataactatgttctcaaaaggagtttagcctggagaacaatgacgatttttcctcttcat 302

                                                                       
Query: 477 tgctgactgccctggtacctgcctctggttctcaggaggagcaacctgggcaaggtgaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgctgactgccctggtacctgcctctggttctcaggaggagcaacctgggcaaggtgaaa 242

                                                    
Query: 537 agaccaagtgttggataccagttttgcatgtgacattcttg 577
           ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 241 agaccaagtgttgaataccagtttcgcatgtgacattcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)