BAC Information

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BAC

Clone NameMSMg01-324F14
Chromosome10 (Build37)
Map Location 7,650,655 - 7,651,274
singlet/doubletsinglet
Overlap genenone
Upstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2
Downstream geneLOC100039046, Ust, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324F14.T7 (MSMg01no324_f14.b1)MSMg01-324F14.TJ (MSMg01no324_f14.g1)
ACCAG442526AG442527
length760757
length of high quality
(start - end)
568 (70 - 637)619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no324_f14.b1 PHD_FILE: MSMg01no324_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:39 2005CHROMAT_FILE: MSMg01no324_f14.g1 PHD_FILE: MSMg01no324_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGCTATGCCGTTGAAAGTTAGTATCAGTTGCCTACTGTTGCTC
TAACAAATCACACAAAGCGATACAAAGTATCCAAGTGCATAGGTTGGAGA
GCTTCAAATCAAGGCGCTGCTGGGCTGTGGTTTTTGTAGACTTTCTAGGA
AAAAGCCTTTTAAAACTTCCAGAGACTGCTGACCTTTTGTGCTGTGTGGC
TTCTTCCTCTGTTTCAGAGACCAGCAACATACCATCTCCAAGTCAGTCTC
TGTGCCCCTAACCTGTAGAGAGATCATCTTATGTATTGCACAGATGCCTC
ATCTGTTAATTAAAAAGGTCTATGGCTTAGGCAGGAAATAGAAGTGGGAC
ATCTGGAGGAGAAAGAACTCTGGAAGAGAAGGAGGTAGGGAGAGGAGCCC
CAAAAGAGGTGAAGAGACAGAGGTGTGGTACCTGATCACAACCATGTGGC
AAAATGTAGGTGAAAATAAATGGGTGTCTTTAGTTTTGATATAGTCAGAG
TAGAACCTAGCTATATAGCCAAGATATTTGTAAAAGTATTTTGAGTCTGA
GTCTTATTTCTGAGAGCACGGGACTGGGAAGCAGAATTAGGACTTAACTT
CAACAGGAACCCGTATTCCTGCCCTCAGCTGCACTGGTTTCTACTCCCTG
CCTCCCTTGCATATAGACCACACGATCACGCTGGGATCCCCGATATTCCA
GGATGACCTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGAAAATCTTTGTATAGACCATCAACTCATTCCA
TCTGCCTCTGCCTCTAGAGACCTAGGACTAAAGTGGAGTGCCACCATACA
CAAGCCATCAACACAATTTTTCTAATAAATTACTGGAATTCTATTTCTTG
AAGTATGATGTTACAATTTTAACAAGATGATCTAAACATATCTGTCAGTA
TTATTTTTCTATGATAGAAATAAAAGAATTATAGCCATTCAATAAAAAAA
TCTGAAATTTAAGTACTATTACCATTTAAAATAAAAATAAGAATTGCCAG
ACCTGGTAGTGAATGCTGTTAATTTTAGCCCTTGGGAGGCAGAGACAAAT
GAAGTGAGTTTGAGGGCAGCCTGGTTTATGTAGTGCTCTAGGACAACCAG
GGCTATCTAGAGAGACCTGTCTTAATGAAAACAAAACCAACAAAATATGA
ACATAAGATTATAACCAATCTTCAGCACTGACTCTGTCATAGAATTTATA
ATATGGAATCACACTGCAAAATCAAATTAACTGCCAAGACAATAATATAG
CAAACCAGCTATTCAAATGCTAAATGATTTTACGGTAGCCATTATGGTCT
AACCTAATACACATAGTAACGTGAAGTGAGCAAGTGAGTAAGCATTATTT
ATACCAGACAGCTTTGCAGGCTGAGAACAATTAACTTTCTAAAGAANAGC
CATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_f14.g1 MSMg01no324_f14.g1 CHROMAT_FILE:
MSMg01no324_f14.g1 PHD_FILE: MSMg01no324_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:39 2005
         (619 letters)



>mm_chr10_7650456_7651474
          Length = 1019

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgtatagaccatcaactcattccatctgcctctgcctctagagacctaggactaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 ctttgtatagaccatcaactcattccatctgcctctgcctctagagaccttggactaaag 259

                                                                       
Query: 61  tggagtgccaccatacacaagccatcaacacaatttttctaataaattactggaattcta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 tggagtgccaccatacacaagccatcaacacaatttttctaataaattactggaattcga 319

                                                                       
Query: 121 tttcttgaagtatgatgttacaattttaacaagatgatctaaacatatctgtcagtatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttcttgaagtatgatgttacaattttaacaagatgatctaaacatatctgtcagtatta 379

                                                                       
Query: 181 tttttctatgatagaaataaaagaattatagccattcaataaaaaaa-tctgaaatttaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tttttctatgatagaaataaaagaattatagccattcaataaaaaaaatctgaaatttaa 439

                                                                       
Query: 240 gtactattaccatttaaaataaaaataagaattgccagacctggtagtgaatgctgttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtactattaccatttaaaataaaaataagaattgccagacctggtagtgaatgctgttaa 499

                                                                       
Query: 300 ttttagcccttgggaggcagagacaaatgaagtgagtttgagggcagcctggtttatgta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttagcccttgggaggcagagacaaatgaagtgagtttgagggcagcctggtttatgta 559

                                                                       
Query: 360 gtgctctaggacaaccagggctatctagagagacctgtcttaatgaaaacaaaaccaaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgctctaggacaaccagggctatctagagagacctgtcttaatgaaaacaaaaccaaca 619

                                                                       
Query: 420 aaatatgaacataagattataaccaatcttcagcactgactctgtcatagaatttataat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatatgaacataagattataaccaatcttcagcactgactctgtcatagaatttataat 679

                                                                       
Query: 480 atggaatcacactgcaaaatcaaattaactgccaagacaataatatagcaaaccagctat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atggaatcacactgcaaaatcaaattaactgccaagacaataatatagcaaaccagctat 739

                                                                       
Query: 540 tcaaatgctaaatgattttacggtagccattatggtctaacctaatacacatagtaacgt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 tcaaatgctaaatgattttacggtagccattatggtctaacctaatacacgtagtaacgt 799

                               
Query: 600 gaagtgagcaagtgagtaag 619
           ||||||||||||||||||||
Sbjct: 800 gaagtgagcaagtgagtaag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)