BAC Information

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BAC

Clone NameMSMg01-324L08
Chromosome10 (Build37)
Map Location 29,637,631 - 29,638,288
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L08.T7 (MSMg01no324_l08.b1)MSMg01-324L08.TJ (MSMg01no324_l08.g1)
ACCAG442786AG442787
length754761
length of high quality
(start - end)
630 (45 - 674)659 (74 - 732)
definitionCHROMAT_FILE: MSMg01no324_l08.b1 PHD_FILE: MSMg01no324_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:05 2005CHROMAT_FILE: MSMg01no324_l08.g1 PHD_FILE: MSMg01no324_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGATCCTCTTACACTTGAGCTTTGTACAAGGAGATAAGAATGGA
TCAATTCTCATTCTTCTACATGATAACCACCAGTTGAGCCAGCACCACTT
GTTGAAAACGCTGTCTTTTTTCCACTGGATGGTTTTAACTCCTTTGCCAA
AGATCAAGTGACCATAGGTGTGTGGGTCCATTTCTGGGTCTTCAATTCTA
TTCCATTGATCTACCTGTCTGTCACTGTACCAGTACCATGCAGTTATTTT
TTATCACAATTGCACTGTAATATAGCTTGAGGTCAGGCATGGTGATTCCC
CCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAGGTTTTCT
GTTATTTCAGAAAAAATTGCAAATTGCCCTTTCTAACTCAGTGAAGAATT
GAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGTTTTTGGC
AGGATAGCCATTTTTACTACATTAATCCTGCCAATCTATGAGCATGGGAG
ATATTTCCATCTTCTGAGATCCTCTTCTATTTCTTTCTTCAGAGACTTGA
AGTTCATATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACACCAAGG
TATTTTATATTATTTGTGACTATTGAGAACGGTGTTGTTTCCCTAACTTC
TTTCCCAGACCGGTTATCCTTTGTGAAAAGACAGGCCATTGATTTTTTTC
AATN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCCAATTCCTTAACTTTACCTTTCAAATTA
ATACAATGTTTTCTTTGACAGCATGATACAGATGACTGTCTAAAAGATAA
TTTTAAAATATGGAGGCATGTTTGTTTTCCTGTTAAATTTATTGTTGTAA
TACAGCTTTCCAAAACAAGTGAGAACACTGGTGAGCAATGCCCGAGCATC
AGTGCTGTGATGCTGATGACAGGAGTGATCTTGGGGCTGCTGCCAGCACT
GCACATCACTTGGGAAACAGAAAAACTGCATCTCATTTACAAGTTGGCAG
ATGACCTCATATTTCATGATACTGTGCTTTAAATCAATCATTAAATGAAC
AGTTCACTTGGGACAGTCAACAACTCTAAAACTACCTACTTTGGCAATGC
CTTTCCCATGTTCTTGAGAAACACAAAGAAATGCCTAGTTTGAAAATGAC
GTGGTACATTTTTATATTAGGTAGCAGGAAATGGAGATTCCTAATTAGGA
ATGGCATCTCCTTATTTAACGAATGAATATTTGATGAATACACAAACAAG
AACTGGAGAAATACATCTGCAGCTTCTAGTGAATGGATGATATTCACTCT
ACCCTGACTGAAGAAAAGCAGGAGTGAGACACACTTCAGACTTGAAAGTG
GAATACAATCACTCTATGAATCCACTGAAAGCCATGTGTTTGTTACCCTT
CAAAAAGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l08.g1 MSMg01no324_l08.g1 CHROMAT_FILE:
MSMg01no324_l08.g1 PHD_FILE: MSMg01no324_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:05 2005
         (659 letters)



>mm_chr10_29637431_29638488
          Length = 1058

 Score = 1236 bits (639), Expect = 0.0
 Identities = 654/659 (99%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattccttaactttacctttcaaattaatacaatgttttctttgacagcatgatacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccttaactttacctttcaaattaatacaatgttttctttgacagcatgatacagat 260

                                                                       
Query: 61  gactgtctaaaagataattttaaaatatggaggcatgtttgttttcctgttaaatttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgtctaaaagataattttaaaatatggaggcatgtttgttttcctgttaaatttatt 320

                                                                       
Query: 121 gttgtaatacagctttccaaaacaagtgagaacactggtgagcaatgcccgagcatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtaatacagctttccaaaacaagtgagaacactggtgagcaatgcccgagcatcagt 380

                                                                       
Query: 181 gctgtgatgctgatgacaggagtgatcttggggctgctgccagcactgcacatcacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtgatgctgatgacaggagtgatcttggggctgctgccagcactgcacatcacttgg 440

                                                                       
Query: 241 gaaacagaaaaactgcatctcatttacaagttggcagatgacctcatatttcatgatact 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gaaacagaaaaactgcatctcatttacaaattggcagatgacctcatatttcatgatact 500

                                                                       
Query: 301 gtgctttaaatcaatcattaaatgaacagttcacttgggacagtcaacaactctaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctttaaatcaatcattaaatgaacagttcacttgggacagtcaacaactctaaaact 560

                                                                       
Query: 361 acctactttggcaatgcctttcccatgttcttgagaaacacaaagaaatgcctagtttga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 acctactttggcaatgcctttcccatgttcttgagaaacacaaagaaatgcctaatttga 620

                                                                       
Query: 421 aaatgacgtggtacatttttatattaggtagcaggaaatggagattcctaattaggaatg 480
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 aaatgacatggtacatttttatattaggtagcaggaaatggagattcctaattaggaacg 680

                                                                       
Query: 481 gcatctccttatttaacgaatgaatatttgatgaatacacaaacaagaactggagaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatctccttatttaacgaatgaatatttgatgaatacacaaacaagaactggagaaata 740

                                                                       
Query: 541 catctgcagcttctagtgaatggatgatattcactctaccctgactgaagaaaagcagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catctgcagcttctagtgaatggatgatattcactctaccctgactgaagaaaagcagga 800

                                                                      
Query: 601 gtgagacacacttcagacttgaaagtggaatacaatcactctatgaatccactgaaagc 659
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 gtgagacacacttcagacttgaaagtggaatacaatcactctatga-tccactgaaagc 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space:   680152
Effective search space used:   680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)