BAC Information

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BAC

Clone NameMSMg01-324L13
Chromosome10 (Build37)
Map Location 61,328,893 - 61,329,045
singlet/doubletsinglet
Overlap geneCol13a1
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Downstream geneEG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L13.T7 (MSMg01no324_l13.b1)MSMg01-324L13.TJ (MSMg01no324_l13.g1)
ACCAG442796AG442797
length743744
length of high quality
(start - end)
---153 (171 - 323)
definitionCHROMAT_FILE: MSMg01no324_l13.b1 PHD_FILE: MSMg01no324_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:06 2005CHROMAT_FILE: MSMg01no324_l13.g1 PHD_FILE: MSMg01no324_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAACGCTTCCCGAACCGGCCCTCAGTGCCAGATATTCTGGAGA
ATGGATGAGGCGTTCTCAGGTTAACCAGATGTGAGCCGGGAGAGACGGAC
ACCAGCTGCCACAGCTAGCGCATATTGAACTCAAATTTCTCATTGAGTTT
CTGTGTCCTATTAGGCTCGGATGTCTCTGGAACGAAACTTGCCATTCCTA
CATGTCATGAAGTGACTTGTTTTTTCCCTCCCGCACAGCTGAGTTGTGTG
TATCTTCTTAGGGAAGATATTTTCCTTCGTCATATGGGCAATAGTCAGAA
TAAGTCTGTCTCCGTAGACAGTATGTACCAGCGGATATCTCTACTTGTGG
ACCGAGGCTTCGAAACACCCGCATACTGCTTGCTTAATTGATCTTGAGAC
CGAGACCTCTGGCGGCTTTCCTCAACTGTCTACTTCTGCGGATGTGCTCT
GACTGCCTCGCCAGTGACCTCTGATTGCACCTGTTTACCTCTGGGGCTGG
GCGGAGTACCTGACCTCACTAAGCGTAATCGGTTTGACTTAATAGCTCAC
AACTCTACTGCGTTGTAGTATTTTTACAGAAGGGTACTGGAGTGAACCTG
TAGAAACACGCCCTTGAAAAACTCCCTAAAAGTGCGTCTCCATCATCGGT
TTGGATGACCCACATCTGTGGAGGACACAAGGATTCCTCCCTC
ACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTTTTCCAGAAGCAGATCT
TGAGATTGCTTATACAGATGTTACCCATTTTTTTTTACAGAAAAGGAAGC
AGGGATGACGGGAGTCTGTGCATCTGGAGGTTCTGTAAATACAACCCAGA
GTTCATGTGCTTGAGCGAGCCTTGGTAGACAAGGGGCTGTCACCACCTGC
AGCCCCGATACAAGGACATGCAGCTCCTGCCCCTGCTCCTCGGGCTGGAA
GACCCCTCTGCCTGGCATGGCGCATGTATCTCATCACAGGTTGTCCAGAG
GTCAGAGCTCCACTGTGCTCTCCATGCCCAGCGCCTGAGGGAAAGCAGGG
AGGAGGGCGACTCACCATCAAGGCCAGCGTCCTGATCTCCTGAAAACAAC
AATACAGTGCAATTAACTGGAGAGCGTGCGACAGTCTCCATCTGCCAGGG
CCCCTCTGCAGTGACATCCCTCTGGAGGGGCGTAGTGTAGGAAGACCCTC
ACTGATGCACTCTGTGGCTCTCAGCTCTATGTCACTCCCACACAGCCCAA
AGGTTTATTATCTGGATGGGAAACCCCTGTTTGAGGTCTCCTCAAAGACA
GAAGCTGTTTCCTCCCTACACCTGCTTTCTTGTGTGGTACAATCTTCTTT
TTTTTCATTGTAAAGTGACTCATCTCCCCTTTTTTTTTTTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l13.g1 MSMg01no324_l13.g1 CHROMAT_FILE:
MSMg01no324_l13.g1 PHD_FILE: MSMg01no324_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:06 2005
         (153 letters)



>mm_chr10_61328693_61329245
          Length = 553

 Score =  288 bits (149), Expect = 9e-83
 Identities = 152/153 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctggaggttctgtaaatacaacccagagttcatgtgcttgagcgagccttggtagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctggaggttctgtaaatacaacccagagttcatgtgcttgagcgagccttggtagac 260

                                                                       
Query: 61  aaggggctgtcaccacctgcagccccgatacaaggacatgcagctcctgcccctgctcct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggggctgtcaccaccggcagccccgatacaaggacatgcagctcctgcccctgctcct 320

                                            
Query: 121 cgggctggaagacccctctgcctggcatggcgc 153
           |||||||||||||||||||||||||||||||||
Sbjct: 321 cgggctggaagacccctctgcctggcatggcgc 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)