BAC Information

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BAC

Clone NameMSMg01-324N10
Chromosome10 (Build37)
Map Location 103,205,553 - 103,206,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324N10.T7 (MSMg01no324_n10.b1)MSMg01-324N10.TJ (MSMg01no324_n10.g1)
ACCAG442881AG442882
length756759
length of high quality
(start - end)		569 (46 - 614)487 (75 - 561)
definitionCHROMAT_FILE: MSMg01no324_n10.b1 PHD_FILE: MSMg01no324_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:15 2005CHROMAT_FILE: MSMg01no324_n10.g1 PHD_FILE: MSMg01no324_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTGTAATTCTCGACAGGTCTGACTTTATCTACTACTTGATCTT
TTCCCTTGTTGCTTTTAATATTCTTTGCTTGTTCTGTACATTTAGTGTTT
TGATTATGTGGGGGAGGATTTTCTTTTCTGGTACAATCTATGTGGTATTC
TGTAAGTTTCTTGTACTATTATAGGCATCTATTTATTTAGGTTACAGAAA
GATTCTTAAATGATTATGTTGAAGATATGTTCTGGGCATTGAGGTTGGAA
TCTTCTCCTTCTGCTCTTCCTATTATTCTTAGTTTTGCTCTTTTCATAAT
GTCCCAAGTTTTCTGGATGTTTTCTGTCATGAACTTTTTAGATTTTGCAT
TTTGTTCAAGTGATGTATCAATTTCTTCCATCTTATCTTCTATGCCTGAG
ATTCTTTCTTCCATCTCCTCTATTCTGCTAATGATGGCTTGTGTCTGTTC
TTATTCCTAGGGTTTCCATATCCAGGATTGCTCCATTTTGTGTTTCTATT
ATTGCTTCTATTTCCATATTCATTTCTTGAGTTATTTTATCATATCTCTT
ACCTGTTCCATTGTATTTTCCTCCTTTAAGGCCTCTATTATCTTCATAAG
GTTGTATTTCCGACAAACTTCCTTTGTTTTAATTATGTTAGAATATTCCA
GGTTTCCTGTATCCGGATTTTCTGGTCTTTGATGTTGCCATCTTGATCTG
GTCATT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAATTTTTGATCAACTATTCATGA
ACATGAGACCTGTACTGGAATGATGGATATATTCATGTCATTCCATTTGA
GTAAACAAATTTTCTCTTTCCTGGCATATATGTGTGTGAGTATGTGTGTG
TGTGTGTGTGTGTGTGTGTGTAATTTCAGTTGCTAACAGTAGTGGCTATG
TTTTCATTCATTTATTCATTCAAAAATTTTAAAAATATTACATAATGAAA
TAAAAACTATGATATCAAAGATGTGCTAGATAAACTAACAGAAGGAAAGA
AGCCCAAGGGTAGGCAAAAGAACCAGAGACTCACTCATTAGCATACTCAG
GAACACTATATAAACACTAACCTGGAAGCCATAATATGACTGCAGAAGAC
ATGGAACAGCTCCATGAAGGCCTTGTGCATGTTTTTAGAGATTCTGTGAG
TTCATATAAACTTTGCTCATCTTGCTTTAGAGAGCCTTTGGGTTTTTTAT
TTTGTTTTCTGTTTGTTTGTTTTTCTATCCTTTCTTGATCCTTAATTCAT
TCTGCTCCTCTTCTTCATGATTCATTGGACTCAAGGGAGACATTTGATAA
AGATAGCCCATTGTATAGCTGAGTATTCCATGGTCTCTGTGTAATGACTA
GAAGTGGGACTTTGCATTTGTCCCTATCTGCTTCCCTAGGAAGGTTTCTT
TATTATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_n10.g1 MSMg01no324_n10.g1 CHROMAT_FILE:
MSMg01no324_n10.g1 PHD_FILE: MSMg01no324_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:15 2005
         (487 letters)



>mm_chr10_103205353_103206239
          Length = 887

 Score =  750 bits (388), Expect = 0.0
 Identities = 466/498 (93%), Gaps = 18/498 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatttttgatcaactattcatgaacatgagacctgtactggaatgatggatatattc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatttttgatcaactattcatggacatgagacctgtactggaatgatggatatattc 260

                                                                       
Query: 61  atgtcattccatttgagtaaacaaattttctctttcctggc------atatatgtgtgtg 114
           |||||||||||||||||||||| ||||||||||||||||||      |||||||||||||
Sbjct: 261 atgtcattccatttgagtaaacgaattttctctttcctggcatatatatatatgtgtgtg 320

                                                                       
Query: 115 agtatgtgt----gtgtgtgtg--tgtgtgtgtgtgtgtaatttcagttgctaacagtag 168
            || |||||    |||||||||  ||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgtgtgtgtgtgagtgtgtgtgtttgtgtgtgtgtgtgtaatttcagttcctaacagtag 380

                                                                       
Query: 169 tggctatgttttcattcatttattcattc-aaaaattttaaaaatattacataatgaaat 227
           |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 381 tggctatgttttcattaatttattcattcaaaaaatttt-aaaatattacataatgaaat 439

                                                                       
Query: 228 aaaaactatgatatcaaagatgtgctagataaactaacagaaggaaagaagcccaagggt 287
           |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 440 aaaaactatgatatcaaaaatgtgcaagataaaccaacagaaggaaagaagcccaagggt 499

                                                                       
Query: 288 aggcaaaagaaccagagactcactcattagcatactcaggaacacta-tataaacactaa 346
           ||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||||
Sbjct: 500 aggcaaaagaaccagagactcactcattagcatactcattaaca-taatataaacactaa 558

                                                                       
Query: 347 cctggaagccataatatgactgcagaagacatggaacagctccatgaaggccttgtgcat 406
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 559 cctggaaggcataatatgactgcagaagacatggaacagctccatgaaggccttgtgtat 618

                                                                       
Query: 407 gtttttagagattctgtgagttcatataaactttgctcatcttgctttagagagcctttg 466
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtttttagagattctgtaagttcatataaactttgctcatcttgctttagagagcctttg 678

                             
Query: 467 ggttttt-tattttgttt 483
           ||||||| | ||||||||
Sbjct: 679 ggtttttgt-ttttgttt 695



 Score = 58.7 bits (30), Expect = 9e-13
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 119 tgtgtgtgtgtgtgtgtgtgtgtgtgtgta 148
           ||||||||||||||||||||||||||||||
Sbjct: 89  tgtgtgtgtgtgtgtgtgtgtgtgtgtgta 60



 Score = 56.8 bits (29), Expect = 3e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 119 tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 147
           |||||||||||||||||||||||||||||
Sbjct: 91  tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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