Query= MSMg01no324_p17.b1 MSMg01no324_p17.b1 CHROMAT_FILE:
MSMg01no324_p17.b1 PHD_FILE: MSMg01no324_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:26 2005
(540 letters)
>mm_chr10_107187439_107188378
Length = 940
Score = 901 bits (466), Expect = 0.0
Identities = 515/538 (95%), Gaps = 10/538 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccctgatactactattcccctttaatgcaccccctgttttcccaaatgacaga 64
||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct: 205 gaattcaccctgatattactattcccctttagtgcatcccctgttttcccaaatgataga 264
Query: 65 ctcaaatcaattgcatcttgactgttagttaattactgtcacagagacacactacaaaat 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaagtcaattgcatcttgactgttagttaattactgtcacagagacacactacaaaat 324
Query: 125 gtctcatccttgataacagagtgtcaccagagcagtatgataattgattcactacctgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctcatccttgataacagagtgtcaccagagcagtatgataattgattcactacctgga 384
Query: 185 aagtcaagtatgcttagtttaatcaaacacgcatatatttagctttgaaactaaagtatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtcaagtatgcttagtttaatcaaacacgcatatatttagctttgaaactaaagtatt 444
Query: 245 tgacatctttaacctgtgtgtgtgtgcatgagagaaagagtgtgtgtcagagagagagag 304
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct: 445 tgacatctttaacctgtgtgtgcgtgcatgagagagagagagtgtgtcagagagagagag 504
Query: 305 agagagggggggggagggagagagagagagagtgt--tanttcnntattctgtcttttcc 362
|||||| || |||||||||||||||||| || ||| |||||||||||||||
Sbjct: 505 agagag--------agagagagagagagagagtgtgttagttcaatattctgtcttttcc 556
Query: 363 atttanatagattgctcatccaggagaatgtggagacattaataagtacccgatacataa 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atttagatagattgctcatccaggagaatgtggagacattaataagtacccgatacataa 616
Query: 423 tgctctctatctaataaaattggaagcttcagtactttccaacaaataggaaaataattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgctctctatctaataaaattggaagcttcagtactttccaacaaataggaaaataattt 676
Query: 483 gcttctagaaatcattttaattgaatatgaagaaagtgttagaaataaaatgaattac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcttctagaaatcattttaattgaatatgaagaaagtgttagaaataaaatgaattac 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_p17.g1 MSMg01no324_p17.g1 CHROMAT_FILE:
MSMg01no324_p17.g1 PHD_FILE: MSMg01no324_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:26 2005
(551 letters)
>mm_chr10_107352189_107353139
Length = 951
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%)
Strand = Plus / Minus
Query: 1 acactctggtgctcaaaggatcctcacagaaaatgccctgtcagccatatatataaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 acactctggtgctcaaaggatcctcacagaaaatgccctgtcagccatatatataaaaca 692
Query: 61 caaaactgtaaaccccttaatgaagtctacctagaaggaagcaaaccctataatctagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caaaactgtaaaccccttaatgaagtctacctagaaggaagcaaaccctataatctagag 632
Query: 121 gattgaagccatcaccgcttatctttaggacatgaacatactttctctcagcagtcataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gattgaagccatcaccgcttatctttaggacatgaacatactttctctcagcagtcataa 572
Query: 181 aggtagacacacacacacacaaatgttgaggatacaagcagaaatcacaggcacaagaga 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 571 aggtagacacacacacacacaaatgttgaggatacaagcaggaatcacaggcacaagaga 512
Query: 241 ctaactccctcacacagtgctctaagtaatataagtgcagcatgtggtagcagtgcagca 300
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 511 ctaactccctcacacagtgctctaggtaatataaatgcagcatgtggtagcagtgcagca 452
Query: 301 aaatacaagaggcaaagtaagatcttgataagaagttaattggaggaacattccttcttc 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaacgcaagaggcaaagtaagatcttgataagaagttaattggaggaacattccttcttc 392
Query: 361 ctccattggatagtgcaaaccaatcactctatggcaacctggaaaattaatgtctatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctccattggatagtgcaaaccaatcactctatggcaacctggaaaattaatgtctatata 332
Query: 421 atgtctagagagtgatggacttttaggactaaactttttattgaaatcgtgaccaataca 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 331 atgtctagagagtgatggacttttagcactaaactttttattgaaatcgtgaccaataca 272
Query: 481 gaatgattatgaagtattacatatggcaaagctaagatagatcacatctaaattaaatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaatgattatgaagtattacatatggcaaagctaagatagatcacatctaaattaaatta 212
Query: 541 cgtaatacacc 551
|||||||||||
Sbjct: 211 cgtaatacacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
