BAC Information

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BAC

Clone NameMSMg01-325B16
Chromosome10 (Build37)
Map Location 24,800,632 - 24,801,217
singlet/doubletsinglet
Overlap genenone
Upstream geneTaar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399
Downstream geneAkap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325B16.T7 (MSMg01no325_b16.b1)MSMg01-325B16.TJ (MSMg01no325_b16.g1)
ACCAG443077AG443078
length739737
length of high quality
(start - end)
680 (46 - 725)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no325_b16.b1 PHD_FILE: MSMg01no325_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:34 2005CHROMAT_FILE: MSMg01no325_b16.g1 PHD_FILE: MSMg01no325_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTCTTACAAAAATGGATGGATTTGGAGGATATCATCTTG
AGTAAAGTAACCCAATCACAAAAGAACACACGTGATATGCACTCACTGAT
AAGTGGATATTAGCCCAGAAGCTCAGAGTCCTTCTTAGAAGGGGGAACAA
AATACCCATGAAGGGAGCTACAGAGACAAAGTTCGGAGCAGAGACTGAAG
GAAGGACCATTCAGAGACTGCCCCACCTGGGGATCCATCCTATATACAAC
CACCAAACCCAGACACTATTTCAGGTACCAATAAGAGCTTGTGGACAGGA
GACTGATATAGCTGTCTCCTGAGAGGTTCTGCCAGTGCCTGACAAATACA
GAGGTGGATGCTCAGTCATCCATTACGTGGAGCACAGGGTCCCCAGTGAA
GGAGCTAGAGAAAGAACCCAAGGAGCTGAAGGGGTTTGCAGCCTCATAGG
AGGAACAACAATATGAACCAACCAGTACCCCCAGAGCACCCTGGTACTAA
ACCACCAATCAAAGAAAGCACGTGGTGGAACTCATGGCTCCAGCTGCATA
TGTGGTAGAGGATGGCCTAGTTGGTCATCAATGGGAGGAGAGGCCCTTGG
TCCTGTGAAAGTTGTATGCCCCAGTATAGGGGAATGCCTGGGCCAGGAAG
TGGGAGTGGGTGGATTGGGGAGCAGGGGGAGAGGGGAGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTGAAATTTTTGCAGGAATTTCCAG
ACTCACCCATATGTCTCCTAAGCCATGAAGATGAATCCTGTCACTCGCTG
TTAATAAGAAAACTTAGGTCTGCTGATAGCAGCCTGCTGCTGGAAATCCC
TCAAGAGTTCATATCTCGCCTGTCTCTCAAAGGCACTGTTGGAAGATGGT
TGAATTTGAAGAGGTAGAACACAGAAGGAGGACTTGATGCCATTGTGGGC
ATGTCCGTGCTGGAGGCTGCAATTCTGACCCTCTCCCCTCCCTCCCACTT
GCTTCCTGGTCATGAGATTGGCTTATTTCTGTGGCATTTTTCTGCCACTG
TTTGATACCTTACCACACGCCCAAAGCCACAAAGCCAACTGATTGTGAAT
CAAAACACCCAGAATACTAAAACATCCAGAAGCCACATGAGCTGACTCGG
ATAAATGCTTTGAAATGATCCTGGATAGAGAAAGGACAGGGATTTGGGTC
ATCTGACAGAGGTCTGTATGTAAAGGGTATATCTGCTATTTGCCTAGCTT
TAGGTGGGGAGGGTAATCAAATTTGTGGACGTGAACATTTTAAAGCATTC
AAAGAACACAGTGAAACAAAGTGTCCTTCCCCGCGCCTGGCCGGTTAGGA
AAGCTTCCCTTCACATCTGCTTCAGGACTCACTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_b16.g1 MSMg01no325_b16.g1 CHROMAT_FILE:
MSMg01no325_b16.g1 PHD_FILE: MSMg01no325_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:34 2005
         (586 letters)



>mm_chr10_24800432_24801417
          Length = 986

 Score = 1102 bits (570), Expect = 0.0
 Identities = 582/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgaaatttttgcaggaatttccagactcacccatatgtctcctaagccatgaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgaaatttttgcaggaatttccagactcacccatatgtctcctaagccatgaagatg 260

                                                                       
Query: 61  aatcctgtcactcgctgttaataagaaaacttaggtctgctgatagcagcctgctgctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctgtcactcgctgttaataagaaaacttaggtctgctgatagcagcctgctgctgg 320

                                                                       
Query: 121 aaatccctcaagagttcatatctcgcctgtctctcaaaggcactgttggaagatggttga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aaatccctcaagagttcatatctcgcctgtctctcagaggcactgttggaagatggttga 380

                                                                       
Query: 181 atttgaagaggtagaacacagaaggaggacttgatgccattgtgggcatgtccgtgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgaagaggtagaacacagaaggaggacttgatgccattgtgggcatgtccgtgctgg 440

                                                                       
Query: 241 aggctgcaattctgaccctctcccctccctcccacttgcttcctggtcatgagattggct 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactacaattctgaccctctcccctccctcccacttgcttcctggtcatgagattggct 500

                                                                       
Query: 301 tatttctgtggcatttttctgccactgtttgataccttaccacacgcccaaagccacaaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tatttctgtggcatttttctgccactgtttgataccttaccacaggcccaaagccacaaa 560

                                                                       
Query: 361 gccaactgattgtgaatcaaaacacccagaatactaaaacatccagaagccacatgagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaactgattgtgaatcaaaacacccagaatactaaaacatccagaagccacatgagct 620

                                                                       
Query: 421 gactcggataaatgctttgaaatgatcctggatagagaaaggacagggatttgggtcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactcggataaatgctttgaaatgatcctggatagagaaaggacagggatttgggtcatc 680

                                                                       
Query: 481 tgacagaggtctgtatgtaaagggtatatctgctatttgcctagctttaggtggggaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacagaggtctgtatgtaaagggtatatctgctatttgcctagctttaggtggggaggg 740

                                                         
Query: 541 taatcaaatttgtggacgtgaacattttaaagcattcaaagaacac 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatcaaatttgtggacgtgaacattttaaagcattcaaagaacac 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)