BAC Information

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BAC

Clone NameMSMg01-325M19
Chromosome10 (Build37)
Map Location 99,887,874 - 100,064,912
singlet/doubletdoublet
Overlap geneTmtc3, 4930430F08Rik, 1700017N19Rik
Upstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M19.T7 (MSMg01no325_m19.b1)MSMg01-325M19.TJ (MSMg01no325_m19.g1)
ACCAG443592AG443593
length753747
length of high quality
(start - end)		708 (46 - 753)680 (68 - 747)
definitionCHROMAT_FILE: MSMg01no325_m19.b1 PHD_FILE: MSMg01no325_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:22 2005CHROMAT_FILE: MSMg01no325_m19.g1 PHD_FILE: MSMg01no325_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,064,209 - 100,064,912)(99,887,874 - 99,888,553)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACAAGAAATAGCCGTACGTATGCCAGTGTCAGAGTAGTTGTCTC
TTATGAAGCTGTTTGTACCTCTTTGTAAGTACGGGCACGAATGTAAACGT
GAGATATGTCTCCTGATCACCTTACAACAGAACCTCTAAGGCCAATAAAT
AGAACTCAACAAAACAGTCTGTATATTGCATGTGAAACCTCTAGTAGTTT
AGGAGTATTGTGGGTTTTGACATGTGTACTGCAATCCAAGAAAGGGGATA
CTAACCATTTGGTTCCTCTTCCTCCTCCTCCTCTTCTTCAAAGTTAGTTT
TTAAAACTAATGGATGATGAATGGGTCTTGATACGTTCTCCATGGGTTTC
AGAGATTCCTGACTCTGGGTTGGCGATGGGCTTCCTTCCTGACTTTCTTT
CTGTAAGGTGGTATCTACAGAGAAAACCCAACACTTTAGTCTGTTCAACC
ATCATTACAAATCCATTCAGTAACCACCCATTCTTCATTATGTTTTTCAT
TGTTTGATTAAAAACATAGAAATGTCCCCATGTCTTCTGGATATGATAGA
GCTGCTATACTCATAAAGTCACAGTAGCTATGGTTGCCTGAATAAGACCT
GTTCAAAATCAAGTGGGTCAAGTTTCCAGTATGGCAAGAATAGGGGCTTC
CAAGGACCCTTCCCTAACTGAGGAGCTATTGACAGTTAATGATTTCTAGA
AGG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGAAGAGTGCTGTAAGACAAGAAGTCTGAGAA
TGGATTAAAGAGAGAAATGATAGTGGAACAAATGCTATAAAATTCATATG
GGGGTTTTAAAAACCTTGTGGTTCATTTGTAGCCAAGAGTTTAAGTCCAG
GACGATGTAACTCAGAAATTTCAATAGAATCCTGATTCACTTGTGGATCA
GGTGGGTTTTGATATTATGCAGGCCAAAGGCTTCTTTTCCAATTTTTCTT
TTCTGAGAATTAAATAAACCAGAGCTGCTTTGTGAGTGTTTTTAAAAGAA
GAAAACGGGCTGCCAAGACACAGTTAATAATATTGTATATGTTTGAATTT
ACCATGAGGGGAACTTTTACTAAGCCCCTATATGACATCTTAGTTTTGCA
AATACCCAGCCAAATATTTCCCCTAATTTGTGATTCTTAAAATGGTTGAT
AAGTATAAGCTTGTAGCCAAATTGAAGCATTAGTCAAGCACATAGCTTAT
GTAGCCTCTAGAACAAAACTAGTCACTTTTGGCCTACTCACTAAAATGAA
CAACATCAATACAATCTTTTTATTTATGTGGGAGTAACTAAAGGTATTTT
AATATATTAACACAAGTGTATATAGACTTTGACTATGAAGAANAACATCA
CTTTGTGATGTTATCCAAGAGCATAAACCTTGTGTGAAGAGACAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m19.b1 MSMg01no325_m19.b1 CHROMAT_FILE:
MSMg01no325_m19.b1 PHD_FILE: MSMg01no325_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:22 2005
         (708 letters)



>mm_chr10_100064178_100065285
          Length = 1108

 Score = 1338 bits (692), Expect = 0.0
 Identities = 701/704 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacaagaaatagccgtacgtatgccagtgtcagagtagttgtctcttatgaagc 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaattctacaagaaatagatgtacgtatgccagtgtcagagtagttgtctcttatgaagc 676

                                                                       
Query: 65  tgtttgtacctctttgtaagtacgggcacgaatgtaaacgtgagatatgtctcctgatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgtttgtacctctttgtaagtacgggcacgaatgtaaacgtgagatatgtctcctgatca 616

                                                                       
Query: 125 ccttacaacagaacctctaaggccaataaatagaactcaacaaaacagtctgtatattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccttacaacagaacctctaaggccaataaatagaactcaacaaaacagtctgtatattgc 556

                                                                       
Query: 185 atgtgaaacctctagtagtttaggagtattgtgggttttgacatgtgtactgcaatccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgtgaaacctctagtagtttaggagtattgtgggttttgacatgtgtactgcaatccaa 496

                                                                       
Query: 245 gaaaggggatactaaccatttggttcctcttcctcctcctcctcttcttcaaagttagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaaaggggatactaaccatttggttcctcttcctcctcctcctcttcttcaaagttagtt 436

                                                                       
Query: 305 tttaaaactaatggatgatgaatgggtcttgatacgttctccatgggtttcagagattcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttaaaactaatggatgatgaatgggtcttgatacgttctccatgggtttcagagattcc 376

                                                                       
Query: 365 tgactctgggttggcgatgggcttccttcctgactttctttctgtaaggtggtatctaca 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgactctgggttggggatgggcttccttcctgactttctttctgtaaggtggtatctaca 316

                                                                       
Query: 425 gagaaaacccaacactttagtctgttcaaccatcattacaaatccattcagtaaccaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gagaaaacccaacactttagtctgttcaaccatcattacaaatccattcagtaaccaccc 256

                                                                       
Query: 485 attcttcattatgtttttcattgtttgattaaaaacatagaaatgtccccatgtcttctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attcttcattatgtttttcattgtttgattaaaaacatagaaatgtccccatgtcttctg 196

                                                                       
Query: 545 gatatgatagagctgctatactcataaagtcacagtagctatggttgcctgaataagacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gatatgatagagctgctatactcataaagtcacagtagctatggttgcctgaataagacc 136

                                                                       
Query: 605 tgttcaaaatcaagtgggtcaagtttccagtatggcaagaataggggcttccaaggaccc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgttcaaaatcaagtgggtcaagtttccagtatggcaagaataggggcttccaaggaccc 76

                                                       
Query: 665 ttccctaactgaggagctattgacagttaatgatttctagaagg 708
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ttccctaactgaggagctattgacagttaatgatttctagaagg 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no325_m19.g1 MSMg01no325_m19.g1 CHROMAT_FILE:
MSMg01no325_m19.g1 PHD_FILE: MSMg01no325_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:22 2005
         (680 letters)



>mm_chr10_99887674_99888753
          Length = 1080

 Score = 1301 bits (673), Expect = 0.0
 Identities = 678/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaagagtgctgtaagacaagaagtctgagaatggattaaagagagaaatgatagtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaagagtgctgtaagacaagaagtctgagaatggattaaagagagaaatgatagtgga 260

                                                                       
Query: 61  acaaatgctataaaattcatatgggggttttaaaaaccttgtggttcatttgtagccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaatgctataaaattcatatgggggttttaaaaaccttgtggttcatttgtagccaag 320

                                                                       
Query: 121 agtttaagtccaggacgatgtaactcagaaatttcaatagaatcctgattcacttgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttaagtccaggacgatgtaactcagaaatttcaatagaatcctgattcacttgtgga 380

                                                                       
Query: 181 tcaggtgggttttgatattatgcaggccaaaggcttcttttccaatttttcttttctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggtgggttttgatattatgcaggccaaaggcttcttttccaatttttcttttctgag 440

                                                                       
Query: 241 aattaaataaaccagagctgctttgtgagtgtttttaaaagaagaaaacgggctgccaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaaataaaccagagctgctttgtgagtgtttttaaaagaagaaaacgggctgccaag 500

                                                                       
Query: 301 acacagttaataatattgtatatgtttgaatttaccatgaggggaacttttactaagccc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 acacagttaataatattgtatatgtttgaatttaccatgaggggaacttttagtaagccc 560

                                                                       
Query: 361 ctatatgacatcttagttttgcaaatacccagccaaatatttcccctaatttgtgattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatatgacatcttagttttgcaaatacccagccaaatatttcccctaatttgtgattct 620

                                                                       
Query: 421 taaaatggttgataagtataagcttgtagccaaattgaagcattagtcaagcacatagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaatggttgataagtataagcttgtagccaaattgaagcattagtcaagcacatagct 680

                                                                       
Query: 481 tatgtagcctctagaacaaaactagtcacttttggcctactcactaaaatgaacaacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgtagcctctagaacaaaactagtcacttttggcctactcactaaaatgaacaacatc 740

                                                                       
Query: 541 aatacaatctttttatttatgtgggagtaactaaaggtattttaatatattaacacaagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatacaatctttttatttatgtgggagtaactaaaggtattttaatatattaacacaagt 800

                                                                       
Query: 601 gtatatagactttgactatgaagaanaacatcactttgtgatgttatccaagagcataaa 660
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 gtatatagactttgactatgaagaaaaacatcactttgtgatgttatccaagagcataaa 860

                               
Query: 661 ccttgtgtgaagagacagga 680
           ||||||||||||||||||||
Sbjct: 861 ccttgtgtgaagagacagga 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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