Query= MSMg01no325_o20.b1 MSMg01no325_o20.b1 CHROMAT_FILE:
MSMg01no325_o20.b1 PHD_FILE: MSMg01no325_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:31 2005
(568 letters)
>mm_chr10_71009473_71010440
Length = 968
Score = 932 bits (482), Expect = 0.0
Identities = 542/566 (95%), Gaps = 10/566 (1%)
Strand = Plus / Minus
Query: 3 gaattctctgagcaatgcccgtctctccccagactcaagtcagctatttgcacctgctaa 62
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctctgagcaatgtcagtctctccccagactcaagtcagctatttgcacctgctaa 814
Query: 63 acacacgtgcgcgtgcgcgcgagcacacacacacacacacacacacacacacacaactag 122
|||||| ||| | |||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 813 acacacatgcac--gcgcgc--gcacacacaca-----a-acacacacacacacaactag 764
Query: 123 ttaattggttacctaatttcaaccatggaaagttagcaaacaacacaaccctttcctagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttaattggttacctaatttcaaccatggaaagttagcaaacaacacaaccctttcctagg 704
Query: 183 tgctcctacataaagcctgctaatgagcacctaaaagaagttccaatttgcttctccagt 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 703 tgctcctacataaagcctgctaatgagcacctaaaacaagttccaatttgcttctccagt 644
Query: 243 gtaatcagataaaccaagtatggcaaggaagtgattttatagggcaggccgcacaatgtc 302
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 gtaatcagataaaccaaatatggcaaggaagtgattttaaagggcaggccgcacaatgtc 584
Query: 303 tgaatctgactgggataattactttttctggctgtcgacagagctctcccaagggttcga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 tgaatctgactgggataattactttttctggctgtcgacagagctctcccaagtgttcga 524
Query: 363 gaacagccacttcaccaccgcaaatcaaatttaatcaaacagtgcaccagggagacaatg 422
|||||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaacagccactttaagagtgtaaatcaaatttaatcaaacagtgcaccagggagacaatg 464
Query: 423 ttttccctcaaccccaccccaccttaacaattctaccttagttccatcttggtcaccaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttccctcaaccccaccccaccttaacaattctaccttagttccatcttggtcaccaaa 404
Query: 483 gtacctggcagctgtgtgtgcctagtgggaactagcctatgattctgatctcactctgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtacctggcagctgtgtgtgcctagtgggaactagcctatgattctgatctcactctgag 344
Query: 543 gctagctttctgcttactcaaatgaa 568
||||||||||||||||||||||||||
Sbjct: 343 gctagctttctgcttactcaaatgaa 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_o20.g1 MSMg01no325_o20.g1 CHROMAT_FILE:
MSMg01no325_o20.g1 PHD_FILE: MSMg01no325_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:32 2005
(346 letters)
>mm_chr10_70831182_70831927
Length = 746
Score = 659 bits (341), Expect = 0.0
Identities = 344/345 (99%)
Strand = Plus / Plus
Query: 1 accttgcacgcatgggtttaaatacctgtctgtcatgctcacgtaatagttaatgtattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttgcacgcatgggtttaaatacctgtctgtcatgctcacgtaatagttaatgtattt 260
Query: 61 aaccaggccgatccccgtgctcagtgacaccaggctctgtgctgaataaaatgtcacttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaggccgatccccgtgctcagtgacaccaggctctgtgctgaataaaatgtcacttc 320
Query: 121 tgttcctcatgagcagctctggaaggcaaggctctcatgctgttgcccgtgtgcctcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcctcatgagcagctctggaaggcaaggctctcatgctgttgcccgtgtgcctcaga 380
Query: 181 gcagtgccttgtcttgtaaggtgctctcagagctgtactgacacagcctgaacactgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgccttgtcttgtaaggtgctctcagagctgtactgacacagcctgaacactgtgg 440
Query: 241 accatgatgcctctgtttcatggtgggcccctgattcagcggttctcaacctgtgggtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatgatgcctctgtttcatggtgggcccctgattcagcggttctcaacctgtgggtca 500
Query: 301 ccatccctttgggggttggggagggtcacatgaccctttcacagg 345
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ccatccctttggggtttggggagggtcacatgaccctttcacagg 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
