BAC Information

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BAC

Clone NameMSMg01-326H18
Chromosome10 (Build37)
Map Location 96,659,496 - 96,659,938
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H18.T7 (MSMg01no326_h18.b1)MSMg01-326H18.TJ (MSMg01no326_h18.g1)
ACCAG444097AG444098
length743766
length of high quality
(start - end)
698 (46 - 743)394 (78 - 471)
definitionCHROMAT_FILE: MSMg01no326_h18.b1 PHD_FILE: MSMg01no326_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005CHROMAT_FILE: MSMg01no326_h18.g1 PHD_FILE: MSMg01no326_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGAGCACGTAGGCTTAGCAGAACCACCCCATGGATTATTTTTT
TGGGGTTCAGTGATTGGTATACTACAGCCCCTGGTTTTGTCTTAGGCTAT
AACTAGCTTTCTCTTTTGGAACTGGTCTAATGCTTGAGTATGTGTGACAC
ATTCTGGAAGCTAAAACCCATTTCTTGACAATGAACAACAATGGACTAGA
AGTGAATATTACTTCATTCCAGGCACAGTACTGTTGTTCTGTAAAGCCTC
TAGTTGAGAACTAGGTCTTATTCTCATATTGAGGAAGGAACTAGGGATCA
AAGAGTTAATAAGCTGTCAGATGAAGTCACATGTCTTCACACAAATGTGC
CCAATGGTGATACACTACCCCCTAGACACATCATTTGCAGTAACGTCCTT
TACACTGACTATATGTACTATCTTCAAGAATTACTGGTTGGGAGAATTCT
CCAGTTTACCTTAGAAGAAACTGGGATACCAGTTATGAATAATATCTTAA
TGAACACTTAATTAATTTATATGACAAAAAGGACAAGTGAAAGTTAAAAT
GTTTATATTTAGATTTTTAGTTCAAAGTAGAGTTTTATTTAAATGTGTCA
CATTAAAGAAAATTAATTGTAAATAACTACTCTACCCACCCACTCACTCC
TACCTTCCCATCCTCGATTCCCCTACTCTGGAGCATCTAATGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCGAGGAAGCAGGAGTGGG
TGGGTTGGGGAGCAGGGCGGGGAAGGGAATAGGGGACTTTCGGGATAGCA
TCTGAAATGTAAATGAAGAAAAGATCCAATAAATAAATAAATAAATAAAT
AAATCCAATAAAAGTGTTTATGAGCTTTTGAAGTTTCCTGGTGGAGTTTT
TAGAGACATTTACTTATACAATTATCATCTGTAAATAAAGATTCGTTGAC
TTCTTCACTCCTTTCTTTCCTATTTGTACTCTCTTATTCCACTCACAAAG
GCTTCAAGTATATTGTGCTCTCCCTCCCTCCCTCTCTAGATAGATAGATA
GATAGATAGATAGATACACAGACAGATAGATAGATAGATAGATAGATGGA
TATCATGTTGATGAAGAGGACGATGNNNTCNNCCCCCCTCTATCCCCACC
CTTTCTTACATTCTTCTTTTTTTATCCTTACTGTCTCTTCATTATTTTAT
CTTATTTCTCTTTTCCCCCATCCTTTTCCAGATACGAATCACCTGATTTA
TATCCGTTTTACATTTCTCTTGTATATTCTTTTCCCATTTTTAGTTTTGG
TTATATCTTCGCCCCCCATTTATATATTTCCATTTTATCCTGCTTACACT
TTGGTTTTTATTCCGTCTTTTTTTTCTATTTATATAAAATTTTCCCTATC
CCTATTATCTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h18.b1 MSMg01no326_h18.b1 CHROMAT_FILE:
MSMg01no326_h18.b1 PHD_FILE: MSMg01no326_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:12 2005
         (698 letters)



>mm_chr10_96659293_96660390
          Length = 1098

 Score =  764 bits (395), Expect = 0.0
 Identities = 431/443 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagagcacgtaggcttagcagaaccaccccatggattatttttttggggttc 63
           ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattctcagagcaagcaggcttagcagaaccaccccatggattattttcttggggttc 263

                                                                       
Query: 64  agtgattggtatactacagcccctggttttgtcttaggctataactagctttctcttttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgattggtatactacagcccctggttttgtcttaggctataactagctttctcttttg 323

                                                                       
Query: 124 gaactggtctaatgcttgagtatgtgtgacacattctggaagctaaaacccatttcttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaactggtctaatgcttgagtatgtgtgacacattctggaagctaaaacccatttcttga 383

                                                                       
Query: 184 caatgaacaacaatggactagaagtgaatattacttcattccaggcacagtactgttgtt 243
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 caacgaacaacaatggactagaagtgaatattacttcattccaggcacagtactcttgtt 443

                                                                       
Query: 244 ctgtaaagcctctagttgagaactaggtcttattctcatattgaggaaggaactagggat 303
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ctgtaaagcctctagttgagaaccaggtcttattctcatattgaggagggaactagggat 503

                                                                       
Query: 304 caaagagttaataagctgtcagatgaagtcacatgtcttcacacaaatgtgcccaatggt 363
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 caaagagttaataagctgtcagatgaagtcacatggcttcacacaaatgtgcccaatggt 563

                                                                       
Query: 364 gatacactaccccctagacacatcatttgcagtaacgtcctttacactgactatatgtac 423
           |||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 564 gatacattagcccctagacacatcatttgcagtaacttcctttacactgaatatatgtac 623

                                  
Query: 424 tatcttcaagaattactggttgg 446
           |||||||||||||||||||||||
Sbjct: 624 tatcttcaagaattactggttgg 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)