BAC Information

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BAC

Clone NameMSMg01-326M12
Chromosome10 (Build37)
Map Location 35,201,612 - 35,201,911
singlet/doubletsinglet
Overlap genenone
Upstream geneFrk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326M12.T7 (MSMg01no326_m12.b1)MSMg01-326M12.TJ (MSMg01no326_m12.g1)
ACCAG444311AG444312
length695717
length of high quality
(start - end)
274 (343 - 616)564 (79 - 642)
definitionCHROMAT_FILE: MSMg01no326_m12.b1 PHD_FILE: MSMg01no326_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:32 2005CHROMAT_FILE: MSMg01no326_m12.g1 PHD_FILE: MSMg01no326_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATGGGCATTTGAGGGGNGGAANNCCCTTGTAATTCTATGGCCGCANNNN
NNAANAGGGNTATTTGATTTTCTGGAGTCCATCTTCTTGCCTTCTTTATA
TATATTTGATACTAGTCCCCTATCTGATTTAGGCTTGCTAAAGATCCTTT
CCCAATGTGTTGATGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTA
CAGAAGCCAAAACTGTTTTTTCTGGACGAAATGGACAAATTTCTGGACAG
ATACCAGGTACCAAAGTTGAATCAAGATCAAGTTGACTGCAATTCAGNCC
CATATCACCTAAAGAAATAGAAGCAGTTATTAATACCCTCCCAACCAAAA
AAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA
GAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGA
AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTA
AACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTGTCTT
ATGAATATCGATGCAAAATTCCTCAATAAAATTCTCGCTAACCGAATCCA
AGAACACATTAAAGTTATATTCTCTTTCTGACCAAGTACGTTTTATTCCA
GGGATGCAGGGATGGTTTACAATACGAATATCCATCAATGTAATC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACTCCCATGACAGGTAAGG
ATGTGGCACAGATGGGGGCAACCTAAGACAGATGTTGATCCCAGAGCTAC
TGATAAAACAAAACGGGGGAGATTCGGGAAGCGGGTGCAGGCACAGGCCC
CGTGAAACCCATTTGTTTACTGCCTTGCCCAAGCATGCACAGTGAGGCTG
CATGCATGGGCTGCCTGCCAGGCTGGACTGTTCCTCATGATCTGGACCTG
TCAGCCTATCAGTGACCAACCTGAGCTTGTGCCTGGAGCATGAGTGAATT
CTGATTGGATGAGGTGGAGTGGAGCAGAAGGAGGTCAGTCAGTGCAAAAA
TAGGAGTTTTTGGTTGCCACCCTTGCTGAAGTGGAGAGAGCTGTACGAAA
AAAGATGACAAGTAAAAGGAGAAGCTGTATCGTGAACCTGACTTGGTGTC
CGTGTAGTTCTTGTGTCTCTGCGGGAAGAAAAGACTGTGGCAATCCTGCT
TCTTAGAGCAATAACTACAGATAAATTTGAAAAGATTAGTACATTGAGAT
GATTACTTAATAACTCTGACACTTCATTCCTGATGATGCCTGCAGCAGTG
AGAATTCAAGATATCTCCCCGTCAATGTGCCAATTTTCATTATAAAGCTA
TTATACCCCAGAGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_m12.g1 MSMg01no326_m12.g1 CHROMAT_FILE:
MSMg01no326_m12.g1 PHD_FILE: MSMg01no326_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:32 2005
         (564 letters)



>mm_chr10_35200948_35201911
          Length = 964

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 265 agtgaattctgattggatgaggtggagtggagcagaaggaggtcagtcagtgcaaaaata 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agtgaattctgattggatgaggtggagtggagcagaaggaggtcagtcagtgcaaaaata 905

                                                                       
Query: 325 ggagtttttggttgccacccttgctgaagtggagagagctgtacgaaaaaagatgacaag 384
           ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 904 ggagtttttggttgttacccttgctgaagtggagagagctgtaagaaaaaagatgacaag 845

                                                                       
Query: 385 taaaaggagaagctgtatcgtgaacctgacttggtgtccgtgtagttcttgtgtctctgc 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 taaaaggagaagctgtatcgtgaacctgacttggtgtccgtgtagttcttgtgtctctgc 785

                                                                       
Query: 445 gggaagaaaagactgtggcaatcctgcttcttagagcaataactacagataaatttgaaa 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gggaagaaaagactgtggcaatcctgcttcttagagcaataactacagataaatttgaaa 725

                                                                       
Query: 505 agattagtacattgagatgattacttaataactctgacacttcattcctgatgatgcctg 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agattagtacattgagatgattacttaataactctgacacttcattcctgatgatgcctg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)