BAC Information

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BAC

Clone NameMSMg01-326N24
Chromosome10 (Build37)
Map Location 38,141,713 - 38,142,385
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326N24.T7 (MSMg01no326_n24.b1)MSMg01-326N24.TJ (MSMg01no326_n24.g1)
ACCAG444380AG444381
length741750
length of high quality
(start - end)
652 (45 - 696)673 (76 - 748)
definitionCHROMAT_FILE: MSMg01no326_n24.b1 PHD_FILE: MSMg01no326_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:39 2005CHROMAT_FILE: MSMg01no326_n24.g1 PHD_FILE: MSMg01no326_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGCAATACTGAATGGCTGAGAAGTACCCAAAGAAATGTT
CAACACCCTTAGTCATCAGGGAAATGCAAATCAAAACAATCCTGAGATTC
CACCCCACATCAATTAGAATGGCTAAGATCAAAAACTCAGGTGATAGCAG
ATATTGGCAAGGATGTGGTTTTGTTTTTTAAATTGTTTTGTATTTCCAGT
TTTATTTCAGTTTGATTTATTATATTTTATTTTTGTGATTTTATCTCCAC
TTTTATGTCTTAAACTTTTCATCAGTTCATTCCACTGTTTGTGCTTTTAC
AGGCTGCTTTATGGGATTTATTCATATCTTCTTTAAGGTCCTTGAACATA
TTCATAAGAGCTCTTCCGAACGCCTTGTCTTGTGGTTCAACTATGCAGCT
TTAACCAGGACCTACCATAGTAGAGATTGTGGGTTCTGGTACCGACATAT
TTTCTTGGGTATTAATGATTTTTTTTTTGCTGGAGTTTACATATCAGGGT
TTGGAATGATAGTGATTCTGGGTGGTGATGTCTGGTATTATCTTTGTTGG
GTGGATGCTCTATCCCTTTGTTTCTGTTGAGTTTCTGGATCTTAAGAAAG
CGTGGTGGCTGTTTGGGTTGTCTAGTAGAGTATGCTTCTGGGACCCTGCC
AGGTGTGGCCACTGAGGGTCCTAGGTAGAACATGATTGTAG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTGGAAGGAATCCTTTAAGTG
GGAAGTTTTATCTGTTTTGTATTAAGGAAAGCAGAGGGAAGAGTTGAGGA
TTTATCTGCTTTGGATAGTAGAGGAAGAAGATATTTTAATTATGTATCTT
GGATATGCAGTTACAACTTGTCTGTAAAGGAAACTGGCTGTTAATTAAGG
ATTAAATAATGGTTATCAGCATAGTTAGTTTGACCTATGGGAGTAGATTA
AATATGATTTTTGAACCTTAAAAGAAATTTTAAACGAGACAATTTTAGGT
TATAAGGCCAGAATGCTAGGGAGAAAAGTAGGCATTTAAATAAAGAAGGA
TGACAATTTTTGGGTTAAGCGCTTCTTAGCAGAAAGACCTATTGTCCTTC
CGTGGTGGTCTCTTTTCAGCTAATTGGAGTGGGGAGGGCCCTGTTCTGCC
ACTCCACTGCTATGTGCTCTAGCAGGCAGGTGTTCATTTCCCCTGTTTGG
TTTTCTTGGCTGGTATTGTTAGAAGGTATACACCCTTAAAGTAGAGCAGA
AAGAGAAGAAAATAGGGACTTGGTGGGACTTGGCAGAGCTAGCAGGAGTG
AGACGACACCCATAGCGCTGCTCCAATTGTCTCTCTAGCCACAGTGGCAG
CAGAGCTGGCTGGACAGTGTGAGAGGGCAAGTGCATGTCTGTACTGTAGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_n24.g1 MSMg01no326_n24.g1 CHROMAT_FILE:
MSMg01no326_n24.g1 PHD_FILE: MSMg01no326_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:39 2005
         (673 letters)



>mm_chr10_38141329_38142401
          Length = 1073

 Score = 1255 bits (649), Expect = 0.0
 Identities = 667/673 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    agtcctggaaggaatcctttaagtgggaagttttatctgttttgtattaaggaaagcaga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 agtcctggaaggaatcctttaagtgggaagttttatctgttttgtattaaggaaagcaga 998

                                                                        
Query: 61   gggaagagttgaggatttatctgctttggatagtagaggaagaagatattttaattatgt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  gggaagagttgaggatttatctgctttggatagtagaggaagaagatattttaattatgt 938

                                                                        
Query: 121  atcttggatatgcagttacaacttgtctgtaaaggaaactggctgttaattaaggattaa 180
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  atctgggatatgcagttacaacttgtctgtaaaggaaactggctgttaattaaggattaa 878

                                                                        
Query: 181  ataatggttatcagcatagttagtttgacctatgggagtagattaaatatgatttttgaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  ataatggttatcagcatagttagtttgacctatgggagtagattaaatatgatttttgaa 818

                                                                        
Query: 241  ccttaaaagaaattttaaacgagacaattttaggttataaggccagaatgctagggagaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  ccttaaaagaaattttaaacgagacaattttaggttataaggccagaatgctagggagaa 758

                                                                        
Query: 301  aagtaggcatttaaataaagaaggatgacaatttttgggttaagcgcttcttagcagaaa 360
            |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 757  aagtaggcatttaaataaagaaggatgacaatttttgggttaagtgtttcttagcagaaa 698

                                                                        
Query: 361  gacctattgtccttccgtggtggtctcttttcagctaattggagtggggagggccctgtt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  gacctattgtccttccgtggtggtctcttttcagctaattggagtggggagggccctgtt 638

                                                                        
Query: 421  ctgccactccactgctatgtgctctagcaggcaggtgttcatttcccctgtttggttttc 480
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 637  ctgccactccactgctatgtgttctagcaggcaggtgttcatttcccctgtttggttttc 578

                                                                        
Query: 481  ttggctggtattgttagaaggtatacacccttaaagtagagcagaaagagaagaaaatag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  ttggctggtattgttagaaggtatacacccttaaagtagagcagaaagagaagaaaatag 518

                                                                        
Query: 541  ggacttggtgggacttggcagagctagcaggagtgagacgacacccatagcgctgctcca 600
            ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517  ggacttgttgggaattggcagagctagcaggagtgagacgacacccatagcgctgctcca 458

                                                                        
Query: 601  attgtctctctagccacagtggcagcagagctggctggacagtgtgagagggcaagtgca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457  attgtctctctagccacagtggcagcagagctggctggacagtgtgagagggcaagtgca 398

                         
Query: 661  tgtctgtactgta 673
            |||||||||||||
Sbjct: 397  tgtctgtactgta 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)