BAC Information

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BAC

Clone NameMSMg01-327M13
Chromosome10 (Build37)
Map Location 92,146,519 - 92,146,886
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
Downstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327M13.T7 (MSMg01no327_m13.b1)MSMg01-327M13.TJ (MSMg01no327_m13.g1)
ACCAG445050AG445051
length744832
length of high quality
(start - end)		375 (48 - 422)260 (79 - 338)
definitionCHROMAT_FILE: MSMg01no327_m13.b1 PHD_FILE: MSMg01no327_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:45 2005CHROMAT_FILE: MSMg01no327_m13.g1 PHD_FILE: MSMg01no327_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCATTTATTTAAAGAAAACAGCAAGTACTAAACAAGTGCTT
ACAGTATTATGAAACCGGGGTGTGATACCCAACTCAAAAAAGCCAGCAAC
ACCCTGCTACTGAAAGGAGACAGCATCCGGACAATCCCACATCACATTTT
AATAGTTCAAATCCAGCAGTCCATTAAATGATATTGCTAAAGGCAATTTC
TTAAAGGTGCAAACTTGGGATAATGAAGAAATCTAAGAAAAGACTATCAC
AAAGCAAACGTTCTTTTTGTAGTTGCAGAAGTATTTGACAGAGCCAGCAT
TCATTCTTGATTTAAAGCCCAGGTGCAAGTGAGTATACAAAAGCCTCATT
TCTGTGTAAGCAACATTTACCCACCAANCCAAATGCCACTTAGAATAGCA
TACAAACATGAGTTATTGAGGAATAGATTTGATAGAAAGACCCATGCACT
GTACTCTCCAATGAGAAGGTAAACTTTATAAGTGTGGCATGCACATCAGG
AGTTAAAACCCTCAGTACTGTGAAATGTCCAGATATATAAAAATATGTGT
CAAATATGTGAAAATATTTGAATAACCAAAGAGTCTAGGGAAAATAGCAC
TTTGGTTTTATATTTCATAATTCCTCATTAAAAGCTACAACTAGCCAAGA
TAACAGGCAAATGTAAATATTATCACATCAATAAGGGATAATAA

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGAAAACCTTGTGTGTCAC
CACCCAGGTTCTATCCACTTTTTCAGCATTTCAGATATTTACATTACAAT
TCATGACCGTAGCAAAATTGCAGTTATGATGAAGCAACAAAATAATTGTA
TGGCGGGGTGGGGGTGGGGTTAACCACAACATGAAGAGTTGGATTAAAAG
TCGCAGCCTTCAGAAGATTAAAAGCAAGCCTTACCAAGGAGAGCAGGCTG
GTTGGGGAAGGAGCCCTAGGGATTTGTCTCTCCAGCACTGGAGTCCCAAG
TGTGTAGATACCATACTCGGCTTCCTGTTTATTCTAGGCTTGTTTTTGAC
GACTAGAATGTTTGTGTTCCCCCCCCCCCCCCCCCCAAAANTTAATATGA
TGTATTAATTCCGTGCTTTCAACCTTTTATATATTTTTCCCCAAAAAGAT
GATTCAGATATACTCCTCTTCCCTCTCTTCCTTTTCTCTCGTCCCCTCGT
CTCCCCTACCCGTACCGTACACTTCTCCACATAAGCGCCTTCCGCGGATG
GTACTCTTTTTGCTCTCGTACGTTTTTTGCGCCCGCCCCGCATTTTAGTA
GCGTTTTCATTTACTATCATTCACTACTCCTCTTCTTATATTGATCGATA
GCTTGCGCTTTCCTATGTTTTTTATTAGACGTCACTCGCCCCCTTTTTTA
TTTTTTCTTCGCCTCCGTGTCCCTATTATCATTATTATTCCCTCCTCCAC
GTCTTCTTCTATTCACACACCGCATAACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_m13.b1 MSMg01no327_m13.b1 CHROMAT_FILE:
MSMg01no327_m13.b1 PHD_FILE: MSMg01no327_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:45 2005
         (375 letters)



>mm_chr10_92146315_92147089
          Length = 775

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcatttatttaaagaaaacagcaagtactaaacaagtgcttacagtattatg 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattctttcaaatatttaaagaaaacagcaagtactaaacaagtgcttacagtattatg 513

                                                                       
Query: 65  aaaccggggtgtgatacccaactcaaaaaagccagcaacaccctgctactgaaaggagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaaccggggtgtgatacccaactcaaaaaagccagcaacaccctgctactgaaaggagac 453

                                                                       
Query: 125 agcatccggacaatcccacatcacattttaatagttcaaatccagcagtccattaaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agcatccggacaatcccacatcacattttaatagttcaaatccagcagtccattaaatga 393

                                                                       
Query: 185 tattgctaaaggcaatttcttaaaggtgcaaacttgggataatgaagaaatctaagaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tattgctaaaggcaatttcttaaaggtgcaaacttgggataatgaagaaatctaagaaaa 333

                                                                       
Query: 245 gactatcacaaagcaaacgttctttttgtagttgcagaagtatttgacagagccagcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gactatcacaaagcaaacgttctttttgtagttgcagaagtatttgacagagccagcatt 273

                                                                       
Query: 305 cattcttgatttaaagcccaggtgcaagtgagtatacaaaagcctcatttctgtgtaagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cattcttgatttaaagcccaggtgcaagtgagtatacaaaagcctcatttctgtgtaagc 213

                   
Query: 365 aacattta 372
           ||||||||
Sbjct: 212 aacattta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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