BAC Information

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BAC

Clone NameMSMg01-328F22
Chromosome10 (Build37)
Map Location 97,920,419 - 97,920,788
singlet/doubletsinglet
Overlap genenone
Upstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik, EG667438
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328F22.T7 (MSMg01no328_f22.b1)MSMg01-328F22.TJ (MSMg01no328_f22.g1)
ACCAG445485AG445486
length736775
length of high quality
(start - end)
374 (47 - 420)302 (77 - 378)
definitionCHROMAT_FILE: MSMg01no328_f22.b1 PHD_FILE: MSMg01no328_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:30 2005CHROMAT_FILE: MSMg01no328_f22.g1 PHD_FILE: MSMg01no328_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCATGCACACAATCAGTATGAACTCCGAACCACTGTTTCCTGTG
GAAAATACTGGCCTAGTCCTGGGAATGCTTTCTATCCAAATCTTGCTGAT
ATTATATACCAGTTGACAGTACTGCTAGTTGGAAAGATATTTTTTTGCAT
TTTAAAATTCATGGTTATCTACAAAGTTCAGTTAATTCTCTTTTAATATC
TCTTATTGTTATTTTATTTCAGTTCTACATAGCTGATACTAATCAAAAAA
ATTACTCTAACACATGAAAAATATTTATGAATGTTAGTGTTTCACATCAC
TACTACTAAATACTTGAGACAAGCAACATGAAAAAAAATCTTAATTTAGC
TTACATTTTTAGAGTTTACAACCCCCCACCCTTTTTACCATCCATGTGTT
ACTGTTAATCAACCTATATATTAATATTGCATTGCATTTTATGATAAATT
ATATTTACATTTTATGCTCTATATTTTTCTTTCTGTTTTTATTATATATT
TTATTGATTTACATTTTACATGATATCCCCTTTCTCAGTTTTCCCCTGCA
AAAGACTTATCCCATCCCCCTTCCTCCTGCTTCTATGATGATGCTTTTCC
ACCCACCCACCCACTTCCTAACTCACCACCCTGACAATTTCCTATACTGG
ATTTTTAAACCTTTCTGGGTACCATGTTTTCTTTCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATGGCCAGCTGCTTAATGAAAT
GGCTGCACACATAAGACCTAAACAAGGATAGTATCGATAGACACACTACA
GTGGGAGTTAGGAATTTCATGGCATCTCATTCTTAGACAAAGAATTCCAG
GCAACCAATGACTGCTGAGAGGGGGAATTAACCTCTCCCGGGGATGAGCT
CCTGACTAAGGTTATCCAATGCAAAGTGGTCAGCCCCCAACCATATACAG
AAGCAACAAAAATGGACTCAGCCGGTTATTGTTACATACTCACACTCATA
CACACATACACATATATGCATGGAACAATGATCACAGAGAAGCTGTCGAT
TTGAGAATCATAGGAAGGACAGGCCCCCCCTCCAAGGAAGGAAAGGAAAT
GGGAAGCTGGATGGAAGATAGGGAAGGCGCAAGCGCTCCTATCTTCTTTC
TCTCCCTCTTCTATATTCCTTCCTCCCGTCCCATCTCACCGCTTCGCCTA
TATTTTTACCTTCCCTTCCTTCCCCTTTTCCCTATCCTTCCTTCCTCCCT
TTTCCTATTACTACTCTTTCGATATCTTTTATTTACGATCTCTCTATATA
TTCCCCCGGTTCCTTTCTCCTTATTATTCCCCTCTCCTTTCTCTTTTTTC
CCCCCTTTTTCCCTTCTCCCTTTTTTCCTTCTTTCTCCTTCCTTTTTCTC
TTTTTCCCCCCTCTTCCTTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_f22.b1 MSMg01no328_f22.b1 CHROMAT_FILE:
MSMg01no328_f22.b1 PHD_FILE: MSMg01no328_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:30 2005
         (374 letters)



>mm_chr10_97920215_97920988
          Length = 774

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatgcacacaatcagtatgaactccgaaccactgtttcctgtggaaaatactg 64
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatgcacacaattagtatgaactctgaaccactgtttcctgtggaaaatactg 264

                                                                       
Query: 65  gcctagtcctgggaatgctttctatccaaatcttgctgatattatataccagttgacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctagtcctgggaatgctttctatccaaatcttgctgatattatataccagttgacagt 324

                                                                       
Query: 125 actgctagttggaaagatatttttttgcattttaaaattcatggttatctacaaagttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgctagttggaaagatatttttttgcattttaaaattcatggttatctacaaagttca 384

                                                                       
Query: 185 gttaattctcttttaatatctcttattgttattttatttcagttctacatagctgatact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttaattctcttttaatatctcttattgttattttatttcagttctacatagctgatact 444

                                                                       
Query: 245 aatcaaaaaaattactctaacacatgaaaaatatttatgaatgttagtgtttcacatcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcaaaaaaattactctaacacatgaaaaatatttatgaatgttagtgtttcacatcac 504

                                                                       
Query: 305 tactactaaatacttgagacaagcaacatgaaaaaaaatcttaatttagcttacattttt 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tactactaaatacttgagacaagcaacatggaaaaaaatcttaatttagcttacattttt 564

                     
Query: 365 agagtttaca 374
           ||||||||||
Sbjct: 565 agagtttaca 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)