BAC Information

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BAC

Clone NameMSMg01-328P11
Chromosome10 (Build37)
Map Location 90,062,510 - 90,063,053
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneSlc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328P11.T7 (MSMg01no328_p11.b1)MSMg01-328P11.TJ (MSMg01no328_p11.g1)
ACCAG445922AG445923
length724734
length of high quality
(start - end)
235 (68 - 302)544 (68 - 611)
definitionCHROMAT_FILE: MSMg01no328_p11.b1 PHD_FILE: MSMg01no328_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:16 2005CHROMAT_FILE: MSMg01no328_p11.g1 PHD_FILE: MSMg01no328_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTAAACGATCCTATTCCCGACGGCGGCGGAATCCAATATTC
CCAGACGAAAGNCTTGNGAGCCAAAACTCTCTTTGAATTCTGGCTGTCCT
GGAACCGCCCTGCACATCAGGCTGGTCTTGAACTCACAGAGATCTGCCTG
CTTCCACCACCAAAGTGCTAGGGCTAAAGGTGTGCACCACCGTGCCTGGC
CCAAGAATTCAGATTCTTAACCATACTTCCTGGTCTATCATGTCATACCT
TAGGCAGGGTCGATACCTGACGTTTCCTGTGATGAAAGGATAACCTGGTA
TACNTTTCATTTGATCCTTGGATTAGATAATGTATGATGTGGTGATATAT
ACCCCACCCACTCACAAAGATTGTCAGGTAATTAACGGTTCATCCAATGC
CCCCCCACGATTATAATGTTTTATCATTTTAATTTCTTAACATAGATAAA
ATTACCAAAGTTATAATTGCCATAAAATGCCCTCAAAATTGGACCATATG
TATAAATTTTAGCAGAATGCCGCTTTGTTTCAGTAAACTATGTAGTCAGC
TTTCTTTATGGGGCTTAAGGCGTTATCTACAGTGACGAGCATTTCTCTTA
GCCATTACCGATTTATATAAACTTTATAAAAAGCTTACTTATTTTTTTCT
CTACAGATTGCATCCCGTATATATATGAACACACAGCCATTACATTTTGA
TACCAAAAAGGCTATCTATTATTA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGTCATTAAACAGGAACTGGCTTGCTCATCTG
TACATTCCTCTCAAGTCAGTTGAAATAAATCCCCAGCACTTGATTTTCTG
ACCCGGTTCTCAGCTATTCAACACCAGCCCATGGTCTGGCATTATGAGAA
ATTTTCCAGTCTGTTGGGTGGAAGTAATCCAATCCTGCCACCGTGGAGGG
AAACCGTGTATAGAGACAGAATCCAAAGAGACTGGAAAGTTTCTGAGACC
TCAGAGAAGCAGAATTTGGTAGTAGCAAGTTTCGACAGGTTCAAGGAAAG
GTGACTGAAACATCAAATATAGACCATCCCAGGGAACGGGGCCACTCTGA
CTTGGAGCATGCACACAGCTAAAGAGCAGAACACGCCATGTCCAATTCTT
CTGGGCACGATCAGCTGCTGCAGCAGGATGAGACAGATGGGACCATTTTA
GGGCCAGGAAAGTGGGCCTCCCTCCTACTGGGGTGAAACAAGTACGGAGG
AACAGATAGAAACGCAATAGTGATGGAAGGCGCTATGCTTTGAGGTAAAT
TGGCGCTCAAGAGGCATAGAGCAAAAGCAGGGCACAGTTAAAGCAGCTAC
TTCAGCAGGAAGCATCTCTCCAAGATAAAGAAGTACTCATGTGTGTATGA
GATTCATGCTCCCTCCCACACAGTCTACGGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_p11.g1 MSMg01no328_p11.g1 CHROMAT_FILE:
MSMg01no328_p11.g1 PHD_FILE: MSMg01no328_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:16 2005
         (544 letters)



>mm_chr10_90062310_90063253
          Length = 944

 Score =  975 bits (504), Expect = 0.0
 Identities = 534/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcattaaacaggaactggcttgctcatctgtacattcctctcaagtcagttgaaata 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cagtcattaaacagaaactggcttgctcatctgtacattcctctcaagtcagttgaaata 685

                                                                       
Query: 61  aatccccagcacttgattttctgacccggttctcagctattcaacaccagcccatggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatccccagcacttgattttctgacccggttctcagctattcaacaccagcccatggtct 625

                                                                       
Query: 121 ggcattatgagaaattttccagtctgttgggtggaagtaatccaatcctgccaccgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggcattatgagaaattttccagtctgttgggtggaagtaatccaatcctgccaccgtgga 565

                                                                       
Query: 181 gggaaaccgtgtatagagacagaatccaaagagactggaaagtttctgagacctcagaga 240
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 564 gggaaaccgtgtatagagacagaatccaaggagactggaaaggttctgagacctcggaga 505

                                                                       
Query: 241 agcagaatttggtagtagcaagtttcgacaggttcaaggaaaggtgactgaaacatcaaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 agcagaatttggtagtagcaagtttcgataggttcaaggaaaggtgactgaaacatcaaa 445

                                                                       
Query: 301 tatagaccatcccagggaacggggccactctgacttggagcatgcacacagctaaagagc 360
            ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 444 aatagaccatcccagggaacggggccactctgacttggagcatggagagagctaaagagc 385

                                                                       
Query: 361 agaacacgccatgtccaattcttctgggcacgatcagctgctgcagcaggatgagacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaacacgccatgtccaattcttctgggcacgatcagctgctgcagcaggatgagacaga 325

                                                                       
Query: 421 tgggaccattttagggccaggaaagtgggcctccctcctactggggtgaaacaagtacgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggaccattttagggccaggaaagtgggcctccctcctactggggtgaaacaagtacgg 265

                                                                       
Query: 481 aggaacagatagaaacgcaatagtgatggaaggcgctatgctttgaggtaaattggcgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 aggaacagatagaaacgcaatagtgatggaaggcgctatgctttgaggtaaattgccgct 205

               
Query: 541 caag 544
           ||||
Sbjct: 204 caag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)