BAC Information

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BAC

Clone NameMSMg01-329C10
Chromosome10 (Build37)
Map Location 99,463,702 - 99,620,908
singlet/doubletdoublet
Overlap geneKitl, LOC100043208
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneLOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C10.T7 (MSMg01no329_c10.b1)MSMg01-329C10.TJ (MSMg01no329_c10.g1)
ACCAG446060AG446061
length736741
length of high quality
(start - end)
558 (43 - 600)337 (77 - 413)
definitionCHROMAT_FILE: MSMg01no329_c10.b1 PHD_FILE: MSMg01no329_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:30 2005CHROMAT_FILE: MSMg01no329_c10.g1 PHD_FILE: MSMg01no329_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,620,498 - 99,620,908)(99,463,702 - 99,464,037)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXATACGAAAGAGGATCCGCGG
AATTCCCCATTACTTCTCATGATCACTAAAAGCAAATGTCCTAAGGTTTT
ATTTCTCTGAGAAGACACCGTGACCACAGCAACTCTTATAGAGGAAAGCA
TTTAATTGGGGCCTGTTTACAGTGTAGAGGTTTAATGCATTATCATCATG
GCAGGAAGCATAGTGACCTGCAGGCAGACACGGTGTTTGAGGGTAGCTAA
GAGTTCCACATCTTGAGCTTCTGAGACCTCAAAGCATGCTTCCACAGTGA
CACACTTCCACAAGGCCACACCTACTCCACCCTTCTAATAGTGCCACTAC
CTCTGGGCCTATGGGGCCATTTTCTTTCAAACTACCATAATCATAGTTAT
GAAATTATTTTTGACGCTCTTCATTTTTCTTCCCTTTTACCTTTTATACT
CATCTAATTGTCTCACAAGCCCCTCCAGCCAAAACAATGGTCTCTTGTCA
GAAAACCCCACAACACACAGTCTGCTTACACACCGTTGCTCAAATGCATG
ATCTTAGTAGGATCCTAGAGTCACTCTATTTAAATTTCAAATCTTCCAGT
GCCCAAACATTTCCCCAAATGCATTCCTGGCTTCATTTCTCACTGAAGCA
TCTCACAGTAGATATAATATACTGATTTTTTTTGTTTTACTTTGCCTCGT
TGCTTGCCCGCTCGCTCCCTCCTTACTAAACTCCTT
CGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTTGATTTACGATTAGATTA
TGACGCCAGACCAAAGTTTAAATATCCTTTTGCTTATAATTGAACTTAAT
TTAAAATAAAAATAAAGCAGCTGTGTGGGGTGAGAGCTTGTGAGATTGGA
TTTACTGGGCTTGGAAGAACTTTGCTCTTAATGTTGTTAAAAATTCTGGC
CTTTTCTGCAGCCCAGTGCTCCTACCTGCACATCATCTGCAAGTAAACAC
TGTATGTGAGCAGCAGGCAAGAGAAATAACAAAGACGTGGATGAGAAGAG
ACAGAGTGTATTTATGCAATATCTTTGTGTTTGCATTTTAAATTTGCATA
TGTATGTTCATTCGCCCCCTGTGTCAATTAATAAAGTAAATTCAGCTGTG
CTTATTAAGCTTTGTGTCCCTGGATAAATTCCCTAATCTCAGTAACTCTT
CCCTCATCTACAAAGTGAGCTACTGAAATGCTCTCTTCAAAGGACTTTAC
AGGATGTGATTACCACACACCACACATGTTGTATATGCAGACTCTCAGCA
GAGTACCCTTGGAGCTGCTCATACACTTTAGAGCTCAGTACAAGTTATTA
ACTATTACGCCCGTGTCTCCATGAACCTTGTACTTCGTCTTTCTCGCCGC
GTCTATGCCCTCCCACTTTTCTTTTTTTCCTCCCCTCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c10.b1 MSMg01no329_c10.b1 CHROMAT_FILE:
MSMg01no329_c10.b1 PHD_FILE: MSMg01no329_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:30 2005
         (558 letters)



>mm_chr10_99619951_99620908
          Length = 958

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 148 ttatcatcatggcaggaagcatagtgacctgcaggcagacacggtgtttgagggtagcta 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ttatcatcatggcaggaagcatagtgacctgcaggcagacacggtgtttgagggtagcta 899

                                                                       
Query: 208 agagttccacatcttgagcttctgagacctcaaagcatgcttccacagtgacacacttcc 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 agagttccacatcttgagcttctgagacctcaaagcatgcttccacagtgacacacttcc 839

                                                                       
Query: 268 acaaggccacacctactccacccttctaatagtgccactacctctgggcctatggggcca 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 acaaggccacacctactccacccttctaatagtgccactacctctgggcctatggggcca 779

                                                                       
Query: 328 ttttctttcaaactaccataatcatagttatgaaattatttttgacgctcttcatttttc 387
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 778 ttttctttcaaactaccataatcatagttatgaaattatttttgaagctcttcatttttc 719

                                                                       
Query: 388 ttcccttttaccttttatactcatctaattgtctcacaagcccctccagccaaaacaatg 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttcccttttaccttttatactcatctaattgtctcacaagcccctccagccaaaacaatg 659

                                                                       
Query: 448 gtctcttgtcagaaaaccccacaacacacagtctgcttacacaccgttgctcaaatgcat 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtctcttgtcagaaaaccccacaacacacagtctgcttacacaccgttgctcaaatgcat 599

                                                              
Query: 508 gatcttagtaggatcctagagtcactctatttaaatttcaaatcttccagt 558
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gatcttagtaggatcctagagtcactctatttaaatttcaaatcttccagt 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no329_c10.g1 MSMg01no329_c10.g1 CHROMAT_FILE:
MSMg01no329_c10.g1 PHD_FILE: MSMg01no329_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:30 2005
         (337 letters)



>mm_chr10_99463502_99464238
          Length = 737

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatttgatttacgattagattatgacgccagaccaaagtttaaatatccttttgctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatttgatttacgattagattatgacgccagaccaaagtttaaatatccttttgctta 260

                                                                       
Query: 61  taattgaacttaatttaaaataaaaataaagcagctgtgtggggtgagagcttgtgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgaacttaatttaaaataaaaataaagcagctgtgtggggtgagagcttgtgagat 320

                                                                       
Query: 121 tggatttactgggcttggaagaactttgctcttaatgttgttaaaaattctggccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatttactgggcttggaagaactttgctcttaatgttgttaaaaattctggccttttc 380

                                                                       
Query: 181 tgcagcccagtgctcctacctgcacatcatctgcaagtaaacactgtatgtgagcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagcccagtgctcctacctgcacatcatctgcaagtaaacactgtatgtgagcagcag 440

                                                                       
Query: 241 gcaagagaaataacaaagacgtggatgagaagagacagagtgtatttatgcaatatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagagaaataacaaagacgtggatgagaagagacagagtgtatttatgcaatatcttt 500

                                               
Query: 301 gtgtttgcattttaaatttgcatatgtatgttcatt 336
           || |||||||||||||||||||||||||||||||||
Sbjct: 501 gtatttgcattttaaatttgcatatgtatgttcatt 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)