BAC Information

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BAC

Clone NameMSMg01-329C21
Chromosome10 (Build37)
Map Location 127,107,185 - 127,107,640
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2
Downstream geneBC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C21.T7 (MSMg01no329_c21.b1)MSMg01-329C21.TJ (MSMg01no329_c21.g1)
ACCAG446081AG446082
length724728
length of high quality
(start - end)		600 (75 - 674)473 (78 - 550)
definitionCHROMAT_FILE: MSMg01no329_c21.b1 PHD_FILE: MSMg01no329_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:32 2005CHROMAT_FILE: MSMg01no329_c21.g1 PHD_FILE: MSMg01no329_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTCCCTTATTCCCCCTACATCTCCCCAACTATGCACATAGGT
AAAAACTTCAGAGGGCTTTCTCAGGCTTCATGGAAGTCCAGTAGAAAACA
GCATCCACAAGAAAGGTGGGCAGGTAGCTCAAGGGGATGAAGAAGAGCTT
AGCATCCCAGCCAGCTGAGTATCGGGTTCGAGGGTGGCAGGCAGTCAGAG
CATGCTCCATACAGTCAGTCACCAAAGACAGGTCCTTGTTGCACCTCTTG
TCCAATTCGTTTAGACTTTTCAGATCTATGCATAATGAGGAATGATTCAG
GTGGTCATTCAGCTTCCACCATTCCTGTCTTACAGCAGCATAGAGGAGAA
CTTCCATTCCCTATGTGGGAGAATCCGCGCGTCTGAAACCCAAGCCCAGC
CTGTCCTAGTTCCTCGAAAGGACCACAAACAATCTTCAAGGAAGTATTGA
GCACTCGGTCACCTGTATCTCAGCTCATGGAAAGTGCTGATCTCATACCA
CCTCCCATCCCTGAATTCAGTTACAGCCCCAAGAGCATGAGAGAATCACA
AGGAAGAGAGAAGCATGTTCTGAAAGACCAGAACTCCTTTCTGACCCCAT
ACACAAACTGCCCACCATCCCAAGGAGATGGNAAATGGGTTCTTTGAGGA
TAAGGGTGAGGCATTAGAACTGCN

NAACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCAGCAATGACACCCCCCAC
TCCCAGTCTGCCTGTTTAAAGAACTGGGATAGACAGAGCATCTGGTATGG
GCAAGGAAGCATGGGGCTTGATGTATGAATAGAAGTTTTCTAGGAAGACA
GGAAGTATAAAGAGAGATAAAATTTGCTTGCGTGAAGGTATGAAACAGCC
AAATGTTTCAGAAGCTAGAGGTTCATGTTTACTGTGGGCGGGGCTATGAG
AAATGATGGCGTGTAAGTCCAATACACTAAGTTTGCACAGATGTCTGGGC
CACCTGTGTACAATGCCCAAAGAAGCCAGAAGAGGGTGTTTGACGCCCTG
GTATTGAAGTTAACAGTTGTGAGCCCCCCGCCCTCTGTGGGTGCTGGGAA
ACAGCTCAAGTCTTCTGGAAGAAGTGGTGTTCTTAACTGCAGAGTCATCT
CTTCAGTCCCTACTTTAACTTACCTTTTTTTTTACCTGGCCTCCTGCTGN
CTCTGTTCCCAGCACTGAGGTCATAGACCTGTGTCTCTCTGCCTGACCAC
CTGCTATTTTTATACTAACCTTTTGAACGCGCACCCCCTATTTCCCTTCT
ATCCCCTTATTCGTATCGTTCTTTTGTNCTTGCCNTCTCTTGGTTCGCTT
CTCCTTTCTCTTCGCCCCTGTTTTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c21.g1 MSMg01no329_c21.g1 CHROMAT_FILE:
MSMg01no329_c21.g1 PHD_FILE: MSMg01no329_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:33 2005
         (473 letters)



>mm_chr10_127106985_127107857
          Length = 873

 Score =  799 bits (413), Expect = 0.0
 Identities = 452/473 (95%), Gaps = 18/473 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaccagcaatgacaccccccactcccagtctgcctgtttaaagaactgggatagacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaccagcaatgacaccccccactcccagtctgcctgtttaaagaactgggatagacaga 260

                                                                       
Query: 61  gcatctggtatgggcaaggaagcatggggcttgatgtatgaatagaagttttctaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctggtatgggcaaggaagcatggggcttgatgtatgaatagaagttttctaggaag 320

                                                                       
Query: 121 acaggaagtataaagagagataaaatttgcttgcgtgaaggtatgaaacagccaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggaagtataaagagagataaaatttgcttgcgtgaaggtatgaaacagccaaatgtt 380

                                                                       
Query: 181 tcagaagctagaggttcatgtttactgtgggcggggctatgagaaatgatggcgtgtaag 240
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tcagaagctagaggttcatgttcactgtgggtggggctatgagaaatgatggcgtgtaag 440

                                                                       
Query: 241 tccaatacactaagtttgcacagatgtctgggccacctgtgtacaatgcccaaagaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaatacactaagtttgcacagatgtctgggccacctgtgtacaatgcccaaagaagcc 500

                                                                       
Query: 301 agaagagggtgtttgacgccctggtattgaagttaacagttgtgagccccccgccctctg 360
           |||||||||||||       |||||||||||||||||||||||||||||       | | 
Sbjct: 501 agaagagggtgtt-------ctggtattgaagttaacagttgtgagccc-------t-t- 544

                                                                       
Query: 361 tggg-tgctgggaaacagctcaagtcttctggaagaagtggtgttcttaactgcagagtc 419
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tggcct-ctgggaaacagctcaagtcttctggaagaagtggtgttcttaactgcagagtc 603

                                                                
Query: 420 atctcttcagtccctactttaacttacctttttttttacctggcctcctgctg 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atctcttcagtccctactttaacttacctttttttttacctggcctcctgctg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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