BAC Information

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BAC

Clone NameMSMg01-329I18
Chromosome10 (Build37)
Map Location 83,928,004 - 83,928,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1
Downstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329I18.T7 (MSMg01no329_i18.b1)MSMg01-329I18.TJ (MSMg01no329_i18.g1)
ACCAG446353AG446354
length778800
length of high quality
(start - end)
278 (61 - 338)333 (77 - 409)
definitionCHROMAT_FILE: MSMg01no329_i18.b1 PHD_FILE: MSMg01no329_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:02 2005CHROMAT_FILE: MSMg01no329_i18.g1 PHD_FILE: MSMg01no329_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCT
CCTGCAGGGGATGCTAGGAGAAACCTGAGAGGATGTGGTTAAAGGGTAGG
ATACAGGGCTATGGAAGGACCCAGAGACTACAGGCAAGAGGCCATTCCTA
CCCTCTGCTCCTGCTACAACTGCTACAGCTCCCTATTGCTGCACCCAACT
GGAAGCTAGAGGACATCAGAGCCCAGGACAGAAGAGACAACCCACAGGGA
TCAACCTCTGGGGCAAGAGAAAGGCTAGAGAATGGATCAGGGCAGACAGT
GGCACGTGACAAGTCTTTTTCTCCTGGGAGAAAGGAGTGAGTTTATAGTC
AGAGGGCACCATTGTGATAGCAAGACTGCTCTGCAATGAATCGCATTTTA
AAACCCCCCCCACCCATTCTAGTCCATTTCACCTATGCCTCCACGCATGC
ACGCACATATGATTCCCATGCCTGCATTCCCCCTTTTGTCTTCTACCCCA
CCCACTTATCCATTTTCTCCCTCTACCCAATACCTCACCCATTTTTTTTT
TTACCCCTCCTCCCCCCCTACTTTTTTTACCTATCCTTTCTATCCTTTAT
TCCCGCTTTCCTTTCCCCTTTCCCCTCTTTTTTCCCTTTCCTACCCCCTT
TCCCCCCCTCCCTTCCCCCTCCCCCCCCTTTTTTTTTCTTTCCTTTCCCC
TCCTTCCTTTTCCCCTCTCCTTGTCCCCCCTTTCCCCTTTCCCCCTCCTC
CTCTCCTTCCGTTCCTCCCCCCCTCTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGAGAAACAGAACATGAAGAC
TGGATAGATATGAAGGGGATTTATTGGGATGACGTACAGGCTATGGTCCA
GCAGTGACCATCTACCAAGAGAAAGTCCAAGAATTTAGTAGTTGTTCAAT
CCACAAGGCTGGATGTCTCAACTGGTGTTCAGTATATGTCAGAACTAGGC
TCTAATTCCAGAGAAAGAACAGACTTGGCAGAGAGAGCAAGCGGGAAAAC
AAGCATGCTTCTATGTTTATATAGGTGACCAGCAGATAGTGTGGCCCAGA
TTAAAGGTATACTTTCCCACTTCAAAAGATCTGGATTAAAGGTGTATCCT
CTTACCTCACATGATCCCGCCACATAAATGAATCATCCTATTTCAAAAGA
TATAATTAACAATAAAATTCCTCACAGTTATACCTAGCTTTATGGTCCTT
TTTACTTCCCTATCTTTCCTAACCTGCCTTTTTTTTACCACCTATTTCTT
TCCTATCCGTTTTCTTCTTTGTTTCTCATTTGCCTCTCTCCCTTATTATT
TCTTTTCTCCCTCTTTGACCCACCATTACTTCCTTCTTTTTTCCCCTCCT
CCCTTTTTACTTACCTTTTCCTCTGTTTTCTTTTCCCCTTCTCCCTCTCT
TATTTCCTTACCCCGTCCCCTTCCTATTCCATCCTTTTCCTCTCCCCCCC
CTGTTCCTCTCCTCCCTTCCTTTTCTTTTTCTTGCGTCCCTTCTATGCAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_i18.b1 MSMg01no329_i18.b1 CHROMAT_FILE:
MSMg01no329_i18.b1 PHD_FILE: MSMg01no329_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:02 2005
         (278 letters)



>mm_chr10_83927803_83928480
          Length = 678

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgctaggagaaacctgagaggatgtggttaaagggtaggatacagggctatggaaggacc 61
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 478 tgctaggagaaacctgagaggatgtggttaaagggtagaatacagggctatggaaggacc 419

                                                                       
Query: 62  cagagactacaggcaagaggccattcctaccctctgctcctgctacaactgctacagctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagagactacaggcaagaggccattcctaccctctgctcctgctacaactgctacagctc 359

                                                                       
Query: 122 cctattgctgcacccaactggaagctagaggacatcagagcccaggacagaagagacaac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cctattgctgcacccaactggaagctagaggacatcagagcccaggacagaagagacaac 299

                                                                       
Query: 182 ccacagggatcaacctctggggcaagagaaaggctagagaatggatcagggcagacagtg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 298 ccacagggatcaacctctggggcaagagaaaggctagagaatggatcagggcagagagtg 239

                                                
Query: 242 gcacgtgacaagtctttttctcctgggagaaaggagt 278
           |||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcacgtgacaagtctttttctcctgggagaaaggagt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)