BAC Information

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BAC

Clone NameMSMg01-330H04
Chromosome10 (Build37)
Map Location 52,813,523 - 52,813,836
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneRos1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330H04.T7 (MSMg01no330_h04.b1)MSMg01-330H04.TJ (MSMg01no330_h04.g1)
ACCAG447002AG447003
length746733
length of high quality
(start - end)
319 (43 - 361)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no330_h04.b1 PHD_FILE: MSMg01no330_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:09 2005CHROMAT_FILE: MSMg01no330_h04.g1 PHD_FILE: MSMg01no330_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTTTCTGTCTGGAACTTAAACTAGGAAACAGCTTCCACAATTCCCT
TTGATCAGTTCAAGGTTTGTCAATATTGCCCTAGATTGGCAGTATTTAGA
GGAATTTGCCTTTAGATGGATTTCCTAATAAGGTACTGACTTCACAGTTT
TGATAACATATCCTAGAATTCGATAGAGAAAAATTAATACCATAAACTTC
TAGTTTCTCTCAAGCATTCCACTTAGGTCATCAGGTCACATGGCTCTTCA
CAGAGAACATCAGGAAGCGACACGTGACCGTGTTTGAAGAACAGCACTCT
AGAATTATATGATCNCTTTCCCCCCCCACCCGTACTCTAAACGTGTTTAC
CATCCAAATATTCACTACTAAACAGACAAATAAATATCTTTTAGAATGAT
GTATCCAAGAAAGTGACTTCAACTGTTCTGTGTAATGTGATTAGGGCCCA
TGTTGTAGAGTTTCTTCTGTTCTCATTAGAAAACATTCGGAATATTTTTG
TCTAATCCTTGTATGAGGCAACTTATCCTGTGGTCTCCAGGAGTTATAAA
GCTATTAGAAAATTCTCTTAATAATTGCCTATGCTGATACCCAAGGTTAG
ATTCCCTCAAGATCACGGACAGAGCTCTGTGACAGTTGACCCTCCATTCT
GCTACTAGTGTTACAGCCCCCATGTTAGAATGAGAATTCTCTTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGAAATATTGAATGGCTGA
GAAGCACTTGAAAAATTGTTCCCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTAGAAATC
AGTCTAGCAGTTCCTCAGAAAATAGGACATAGTACTATAGGAGGATCCCG
CAATACCTCTCTTGTGCTTATCACCCCCCCCATCTTCCAACAGGTAAGAA
GGACGCATGCTCCAATATGTTCATAGAAAAAATAAAAATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAGGAATGAATT
TATAAAATTCCTAGGCAAATGGATGGACCTGAAGGGCTTCATCCTGAATG
AGGCAACCCAATCACGAAAGAACTCCCATGATATTTATTCCTTGAAAAGT
GCATATTAACCCAGAAACTTATAGAATCCATGATATTAGATTTAACTTGG
CAAGCCCATGATACTGAAGAATAATGAAGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_h04.b1 MSMg01no330_h04.b1 CHROMAT_FILE:
MSMg01no330_h04.b1 PHD_FILE: MSMg01no330_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:09 2005
         (319 letters)



>mm_chr10_52813320_52814038
          Length = 719

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctttctgtctggaacttaaactaggaaacagcttccacaattccctttgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctttctgtctggaacttaaactaggaaacagcttccacaattccctttgat 263

                                                                       
Query: 64  cagttcaaggtttgtcaatattgccctagattggcagtatttagaggaatttgcctttag 123
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 cagttcaaggtttgttaatattgccctagattgggagtatttagaggaatttgcctttag 323

                                                                       
Query: 124 atggatttcctaataaggtactgacttcacagttttgataacatatcctagaattcgata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggatttcctaataaggtactgacttcacagttttgataacatatcctagaattcgata 383

                                                                       
Query: 184 gagaaaaattaataccataaacttctagtttctctcaagcattccacttaggtcatcagg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gagaaaaattaataccataaacttctagtttctctcaagcattccacttaggtcattagg 443

                                                                       
Query: 244 tcacatggctcttcacagagaacatcaggaagcgacacgtgaccgtgtttgaagaacagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacatggctcttcacagagaacatcaggaagcgacacgtgaccgtgtttgaagaacagc 503

                         
Query: 304 actctagaattata 317
           ||||||||||||||
Sbjct: 504 actctagaattata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)