BAC Information

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BAC

Clone NameMSMg01-330I14
Chromosome10 (Build37)
Map Location 59,592,655 - 59,592,938
singlet/doubletsinglet
Overlap geneSpock2
Upstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1
Downstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330I14.T7 (MSMg01no330_i14.b1)MSMg01-330I14.TJ (MSMg01no330_i14.g1)
ACCAG447066AG447067
length849758
length of high quality
(start - end)
---286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no330_i14.b1 PHD_FILE: MSMg01no330_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:16 2005CHROMAT_FILE: MSMg01no330_i14.g1 PHD_FILE: MSMg01no330_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTCAATGGGAACCCAGGAACCGAGGTCTTTCGTAATAGTCC
CAAATGCAAGAGCCATATGGGTGTTTTCATCACTCNNGCGANGCAACAGG
GAAATATAAGCCTGGCAAGCGAGGCTCTAAGGGCTGAAAGAGAATTTGTT
TTAGGGCGGGAGGGAGATTCTATCCGGCAAAAAACCCGCGTTTTTTTTTG
GTTATTTGGGTTTTTTTAAAAAAAGGTTGGGTTATTGTGTGCAACATGGG
TCCCCTTGAGGGGAAAAAAAAGACCAACTTTCACCCCAGAAACCGGGGGC
CCGTGGTGGGGTGATGAGCCCCACCCCAAAATTAATAGGGCGGAGTTTAT
TTAGTGNTCTTCCCCCCCCCACCCCCTCCTGTATAATAATAATTTATGGC
GGGGGAAGAATACCGGCGCTTTTGTTAATAAAAAAAAAAAAAACCACCTG
GTGGGGTGGGTTCTTCCTCCTTGTTGGACAGACACTTCCTTTTTTTTGTT
GTTGCCGGAATATTCTTCCACCAATATTATTATTCTTCTCCCCCTGTCTC
TTTTTTCCCCCTCCCTCTGCCGGTATATTCTTTTCTCTCTCTCTCCCACC
CCCTTTTCTTTCCCCCCTCCCGCGTTTTTATTTTTCTACCCTTATTTTAT
TCCGCCGGTCCTTCTGTGCACAATTCAAATTGCCCCGCGCTTAATCCCGC
CCCGAAGCCGGATAGTGTTATCGTCTGACCTCTTTCTTTATCCGACTTTT
CTTTCCTCTATTAATGTAATTTATTCTGCACCCTGCATCCCGCGCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCCGACTCTGCACGCTGAGT
GTTCCCATGGCTAGGCTGTCCTAAGCCTTTACACAGCCATGAACCTTGTC
TGCCTTGCCTGTCAGTTCTGACCTAGGCTGGGCTGGGTCTCTCATCTCTT
CAGGGTGCTCATTTAGACTGTGAATAAGCATCTCCCATGGAGGGGGTCCC
ATTCCAGCCTTAGACACACACCTGTTGCAGTGAATTTAAGTAGAGGACTC
TCCAGCCCTGGTCTGGATGACCCTTATTGTTTAAGCATACTCCCTAGGGG
CACCTGAGGATACNCNTTGCNATCCAGNCCATGACCCCAAGAAAGGTGGT
TTCCTGCGCCGTCCTAGGCCAGGGGCCAAATTTAGGAAAATCGTGTGCCG
TAGAGCAAGGTAGTATAAACCTCTGGGCCTCAAGGAAGCATAGGGCAGCA
TCCCTGGGCCCCTCCTCTGCGCCCCTCCTTACCTGGCTTCTTCTTGGCTG
CCTCCTGGATCTGTGTGCGCTCCAGCTCTGCCAGGCATGGGGGCTCTGTA
GAGAGAAGCAGCCTTACGTGTGTCCCATGGTGCCGAAAGCACACCGAGTC
CCCCAACTTATAACCTTTTGTGGGGCTCTGCAAAATAAAACACCTGGTTC
TCTCCCATCAGGACCTACTCAGGATGCGGTATTCACTATGCCCCGATTCT
TACTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_i14.g1 MSMg01no330_i14.g1 CHROMAT_FILE:
MSMg01no330_i14.g1 PHD_FILE: MSMg01no330_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:16 2005
         (286 letters)



>mm_chr10_59592455_59593140
          Length = 686

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcccgactctgcacgctgagtgttcccatggctaggctgtcctaagcctttacacag 60
           |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 484 tcttcccgactctgcacgctgagtgttcccatggcttggctgtccaaaggctttacacag 425

                                                                       
Query: 61  ccatgaaccttgtctgccttgcctgtcagttctgacctaggctgggctgggtctctcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccatgaaccttgtctgccttgcctgtcagttctgacctaggctgggctgggtctctcatc 365

                                                                       
Query: 121 tcttcagggtgctcatttagactgtgaataagcatctcccatggagggggtcccattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcttcagggtgctcatttagactgtgaataagcatctcccatggagggggtcccattcca 305

                                                                       
Query: 181 gccttagacacacacctgttgcagtgaatttaagtagaggactctccagccctggtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gccttagacacacacctgttgcagtgaatttaagtagaggactctccagccctggtctgg 245

                                                       
Query: 241 atgacccttattgtttaagcatactccctaggggcacctgagga 284
           |||||||  | |||||||||||||||||||||||||||||||||
Sbjct: 244 atgacccaaagtgtttaagcatactccctaggggcacctgagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)