BAC Information

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BAC

Clone NameMSMg01-331C09
Chromosome10 (Build37)
Map Location 25,952,411 - 25,952,753
singlet/doubletsinglet
Overlap geneSamd3
Upstream geneAkap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352
Downstream geneL3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331C09.T7 (MSMg01no331_c09.b1)MSMg01-331C09.TJ (MSMg01no331_c09.g1)
ACCAG447521AG447522
length812725
length of high quality
(start - end)
345 (129 - 473)573 (68 - 640)
definitionCHROMAT_FILE: MSMg01no331_c09.b1 PHD_FILE: MSMg01no331_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:00 2005CHROMAT_FILE: MSMg01no331_c09.g1 PHD_FILE: MSMg01no331_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCCTTTCTCGTCTTTTTGTTTATCTTTCTAAGTCCACAATAAAACTG
CTCCCTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATATGGAG
CCGCGGAATTCACATCATTACCCACAACAATCTTGGGGCAAATCTGCCCT
CCCTTTAACAGACCAACACAGTCCTCTGTCAATTATGCAATTTTTTAAAA
CAAGGTTATGACAAGTAGTTTCAACTGTAGCCAAGACTAGGCATTCTGGT
AGCCCAGAGATTTGTGAATGTTAGGTTCCTTGCTCTAGCTAGCACGTTCG
ACTTTAAGGGTTAGTGCAGTCTTGCTTTTAGGTGAAAGTATTTTGGCATG
AAATCACAACTTGCTTACTGGTTATATTTGCCAAGGATATTGTCACTTGA
AAAGTATGTTGTCAGTTGACAATGATAATAGTCAGACATGAATACATACC
ATGGAATGACTATTGAATGACACCCCCCACACTATTATCTGAGAAACACA
GACTCTACTTATTACTAGAAAGTTTCACCTCAACAGCATTCAATACTATG
TCACACTATATATCAGCATGATAGTTGGCTCAGTTGTGAAGAGATGGCTC
AGTTGCGAAAATTGACAATATGACCCCATTACACAGCACCCATATGAAAG
TGCAGGTGCAATTGACTTCCGTTTTACTTGGAGATTGACAAAGGCAGACT
CCTTGCTACTGCCGCACTTGTCATCCTTCTTTCTCACCTAGTCCCCGATT
TCAAAACTAACTCACTTGCTATAAGTTTCCGATTCATAGCAATTCTGAGC
CCGCATTTCTGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAGAGTTT
TGCTGGATATAGTAGCCTGGGCTGGCATTTGTGTTCTCTCAGGATCTGTA
TAACATCTGTCAAGGATCTTCTGGCTTTCATACTCTCTGGTGAGAAGTCT
GGTGTAATTCTAATATGTCTGCCTTTATATGTTACTTGACCTTTCTCCCT
TACTGCTTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTCTGATCA
TTATGTGTCAGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTA
TAGGCTCCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTAGGGAAGTT
TTCTTCTATAATTTTGCTGAAGATATTTACTGGCCCTTTAAGTTGAAAAT
CTTCATCTCATCTATACCTATTAACCTTAGGTTTGGTTCTCATTGTGTCC
TGGGTTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTGCATTTTC
TTTGATTGTTGTGTCTATGTTTTCTATGGAATCCTCTGCACCTGAGATTC
TCTCTTCCATCACCTGTTTGATTGTGTTTTCCTGTAATTCTTTGAGGGAT
TTTTATGCTTCCTCTTTAAGGACTTCTACTTGTTCGGCAGTGTTCCCCTG
TATTTCTTTCAATGAGTTATTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_c09.b1 MSMg01no331_c09.b1 CHROMAT_FILE:
MSMg01no331_c09.b1 PHD_FILE: MSMg01no331_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:00 2005
         (345 letters)



>mm_chr10_25952211_25952955
          Length = 745

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttggggcaaatctgccctccctttaacagaccaacacagtcctctgtcaattatgc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcttggggcgaatctgccctccctttaacagaccaacacagtcctctgtcaattatgc 260

                                                                       
Query: 61  aattttttaaaacaaggttatgacaagtagtttcaactgtagccaagactaggcattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttttaaaacaaggttatgacaagtagtttcaactgtagccaagactaggcattctg 320

                                                                       
Query: 121 gtagcccagagatttgtgaatgttaggttccttgctctagctagcacgttcgactttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcccagagatttgtgaatgttaggttccttgctctagctagcacgttcgactttaag 380

                                                                       
Query: 181 ggttagtgcagtcttgcttttaggtgaaagtattttggcatgaaatcacaacttgcttac 240
           |||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 ggttagtgtagtcttgtttttaggtgaaagtaatttggtatgaaatcacaacttgcttac 440

                                                                       
Query: 241 tggttatatttgccaaggatattgtcacttgaaaagtatgttgtcagttgacaatgataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tggttatatttgccaaggatattgtcacttgaaaagtatgttgtcagttgagaatgataa 500

                                                      
Query: 301 tagtcagacatgaatacataccatggaatgactattgaatgac 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtcagacatgaatacataccatggaatgactattgaatgac 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)