BAC Information

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BAC

Clone NameMSMg01-331M23
Chromosome10 (Build37)
Map Location 104,098,347 - 104,098,977
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331M23.T7 (MSMg01no331_m23.b1)MSMg01-331M23.TJ (MSMg01no331_m23.g1)
ACCAG448011AG448012
length724732
length of high quality
(start - end)
371 (47 - 417)646 (68 - 713)
definitionCHROMAT_FILE: MSMg01no331_m23.b1 PHD_FILE: MSMg01no331_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:46 2005CHROMAT_FILE: MSMg01no331_m23.g1 PHD_FILE: MSMg01no331_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCTTTGTTTATCTCCGAACCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTCGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTTAAAGAAGTTTTGCAACTTTATG
AGGTCTACTAGTCTCTCATTATACCAGTACCATGGGCATATATCCAGATG
TCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTG
TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACACAGGA
ATGGATACAAAAAAAATATGCCACATTTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGAT
ATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATAGCCGAG
ATATAAGATATAATTTGCAGAACACATGAAACTGAAGAAGAACGAAGACC
AAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCACCCATGG
AAGGAGTTACAGAGACAAAGTTTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCGAATTCAGAAGCAGCTAATTGCCCTGGGGACCTTCTTTTG
GCGTATTGCCCAATGGTACTCTTTGTGGGAGAAACAGCTTCACACACAGA
GCTTCAAAGCATCTGGGTTGCTGTTCTGAATGCTACTGCTGACGGATTTA
CCATCTGCCTTTGAGAAAGACAGCAATCTAGGGAACTTTGATACTAAGCA
TCCACACGATAGCCATTGACAGCCGAAAGCCTTCCTTAAATAAGAGATTA
AAATAAACTATGTATGAACCAACCAAATTGGACCACTTTTACTTTTGATT
ATCTACAAATATGATGTTGAAATGATAGCAGAGGATTTATTGAGCATTAA
CTGCTGATACAAATTCTTTTATACTTTACATATCTTTATGGGTAGCCACA
TAATTTGGTGAGTACAACTTTATCTGTACCTTAAATATAAGTTCACCCTT
TTGGGAGAAAACTACCTGCCGCAAGGTTACTCGAGACACAGAAAAAAGTT
AGGATCTAGGTATTCATAATCAGTATTCTGTATTTATTTAAATACTAACT
TTTTATTAATTTTCTGTCATAGCAAGGTTGTGTTCTTAATTTCTGGGCAA
GGGTTGAATATTTTGTAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CACACACACACACAAACACTCACACACACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_m23.g1 MSMg01no331_m23.g1 CHROMAT_FILE:
MSMg01no331_m23.g1 PHD_FILE: MSMg01no331_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:46 2005
         (646 letters)



>mm_chr10_104098176_104099221
          Length = 1046

 Score = 1143 bits (591), Expect = 0.0
 Identities = 621/631 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcagctaattgccctggggaccttcttttggcgtattgcccaatggtactctttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaagcagctaattgccctggggaccttcttttggcgtattgcccaatggtactctttgtg 743

                                                                       
Query: 61  ggagaaacagcttcacacacagagcttcaaagcatctgggttgctgttctgaatgctact 120
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggagaaacagcttcacacgccgagcttcaaagcatctgggttgctgttctgaatgctact 683

                                                                       
Query: 121 gctgacggatttaccatctgcctttgagaaagacagcaatctagggaactttgatactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gctgacggatttaccatctgcctttgagaaagacagcaatctagggaactttgatactaa 623

                                                                       
Query: 181 gcatccacacgatagccattgacagccgaaagccttccttaaataagagattaaaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcatccacacgatagccattgacagccgaaagccttccttaaataagagattaaaataaa 563

                                                                       
Query: 241 ctatgtatgaaccaaccaaattggaccacttttacttttgattatctacaaatatgatgt 300
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 ctatgtatgaaccgaccaaattggaccacttttacttttgattatctacaaatatgatat 503

                                                                       
Query: 301 tgaaatgatagcagaggatttattgagcattaactgctgatacaaattcttttatacttt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 502 tgaaatgatagcagaggatttattgagcattaactgctgataccaattcttttatacttt 443

                                                                       
Query: 361 acatatctttatgggtagccacataatttggtgagtacaactttatctgtaccttaaata 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 acatatctttatgggtagccacataatttggtgagtacaactttatctgtaccttaaaga 383

                                                                       
Query: 421 taagttcacccttttgggagaaaactacctgccgcaaggttactcgagacacagaaaaaa 480
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 382 taagttcacccttttgggagaaaactaactgccgcaaggttactcaagacacagaaaaaa 323

                                                                       
Query: 481 gttaggatctaggtattcataatcagtattctgtatttatttaaatactaactttttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttaggatctaggtattcataatcagtattctgtatttatttaaatactaactttttatt 263

                                                                       
Query: 541 aattttctgtcatagcaaggttgtgttcttaatttctgggcaagggttgaatattttgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aattttctgtcatagcaaggttgtgttcttaatttctgggcaagggttgaatattttgta 203

                                          
Query: 601 ggtctctctctctctctctctctctctctct 631
           ||||||| ||||||||| |||||||||||||
Sbjct: 202 ggtctctttctctctctgtctctctctctct 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)