BAC Information

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BAC

Clone NameMSMg01-332D13
Chromosome10 (Build37)
Map Location 50,320,337 - 50,321,090
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332D13.T7 (MSMg01no332_d13.b1)MSMg01-332D13.TJ (MSMg01no332_d13.g1)
ACCAG448310AG448311
length1,2711,292
length of high quality
(start - end)
559 (133 - 691)732 (129 - 860)
definitionCHROMAT_FILE: MSMg01no332_d13.b1 PHD_FILE: MSMg01no332_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:26 2005CHROMAT_FILE: MSMg01no332_d13.g1 PHD_FILE: MSMg01no332_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACGACCATTTNNNAACATTGGCGNTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCTTACACAAAACAAAGGACCTCACGACGCACGAACTGGNA
GGAACCAACTGGGGNAAACCTTAAAGTTAACAACTGGGATCAAAACAGCT
CCACCTAAGGTCCACTTAATCTTAGAAGCCAGGGGCAAGGGCTTCGTGCC
CTCGCCATAGTTCCTACTCTAGTCTATTGTATAGTCCACCTTCCCCCTAG
GCCATTGTAAATACTTGTTTGTGTATGGGTGTAACTCAGCTATCTATAGT
TCTAAGTATCTACTCTGGTTTCTCTTTAGGTCACAAACTTCCTTCTTCCT
AAATAATGGTAAATTTCTGAGTAGGGCAGTGACTTAGCTATCCATGCCCA
AGGTCAGATCAAGGACTGCCTAGAATCTAACTTAGCTATATTCAAAATAT
CAGTCCTTAGGAGCACTTATAATAAAGCAATATTAAGGGAAAGCACACAG
ATTCGTTTACCAACTAAAGGACATTGGAGCATTCTTTATACAGGATGTCA
CGATTCCAGGAGACTAAGTTTCCGTGAACTTTTCACCTTGGGACAGCGCC
CAGGTTTTTGGGGCCTGCTCGATTGTCACTACTGGAGTGGATGTAGCATC
ATACAGGTAGTAACCCAGCCCATTTATTTAGAACTATAGATTGTTCTTGT
TACTCAGTGTTAAATAGACACTTGCTAAACAGGACTCAACTTCTAAATAT
CATACATGTAGGACACCATCCTATTTAGGACTATAGATTGTCTATGTTAT
TCAATGATCAATAGATACTTGCCAAACAGGACTCAATTTGTTTTGTAAAT
TTGAAAGGGATATCTCATTTTCTATTCTCATCCCAATGCTTTTCCTAAGC
AGGTTCCTAAATTGAGTCGGCCACTTCCTGTTAAGGAAACTGAACATGGT
TTAATACTCCCCCAGCTAAGAAAATTCTCCAAAATTTCTGCTTTTATGGA
CTTGAACACTTTAGGAAGATGGACCTAACTGACCCCCAAAACCGGTTTTA
TAACTTTGTAATTAACATAAAATATAAAAGAGGGGTTTAAATTCCGGCGG
AGGAAAACCTTCCCGAGTTCCTCCCCGACAAAAACCCCCAAAAGCTTGGA
CAGGGGGAACGAGATCGGCCCTTGGTTTGGAGACAACACGGAATCTAGGA
GTCTTTAATTAGGTGGGAACACCACTCACGTCTAACCACAAGCAAGGANN
NNNNNAANAATCAAATACTAA
CCAACCCTTTNNNNNAAGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAACTCAGGAACAGAT
CATTAACTACCTGCACACACCTCACACAATACAAAATGTATGCTTATGTA
TTTTACAAACATAAAAATAGAGATTGTGTTATTTACTGAGAAACCTTGTT
TCTAGTTGTGGTGTGGCTCAGCCTTTAGCATACATAACACCGTCAATCAC
TGTGGCTGGAATACAGACTGCAGAGGAGTTTGAGCCAGAACAGCTGAGTT
GAACCAGCCAGCCAGTGTTCAGAAAGAACTAAAAAGAGTGAGCTTATGCA
GCAGTAAGTCTCAGGGGCTGAGAACATTCTAAGCCTAGATCAGATTGTAC
AGAGGCGAGAATCTTCCAAGACTAGGCCTAGGTTAGCAGACAATTACATC
AAGTGAACTAAAGATATCTTCACATGTTTATAAACTGAATCTCTAGGGAT
GTTCTAGGAACAGGTTTAGATGCTTGGAATTAAAGGAAGTTTGAAACATC
TCTCCATTCCTAGTAGGAGCTTTACAATTAGAAAGCATTTTCTCCAAATA
CAAAAATTATTCATAAAAGGTTGTGCCATCCTTAATTATTCACTATTGCT
AAATGGATAATGGTGGATATTCTCCTCCCGCCCCCGGTTTTTTTGAGACA
GGGTTTCTCTGTGTAGTCCTGGCTGTCCTAGAACTCACTGTATAGACCAG
GCTGGCCTTGAACTCAGAAATCCGCTTGCCTCTGCCTCTCAAGTGCTGGG
ATTAAAGGCGTGCACCACCACTTCCCGACCAATCACATACTTGTTGTCAG
CTGATGAAATCTGTGTCTGTGTCTCACATATAGATAAATGAGGCGAGCAA
AATGACTCTGGTTGCAGAAGACTCAAGATTAAGCTTTTAACACTCAAAAC
AAGTAGTTCCACATGCCCTGCACTCCAGCTCCTAAGGATTGAATGCTCCC
AACTTCCCTCCCCAGGAACCTGATGCCCATGGTATATACAAAACTCATAC
CGGCAAAAAACCCGCATTTAAAAAATTAATGGTCTCACTATATCAGCCAC
TTTAAGGGCGGCCTTAACTAATACCCCCAAGAAAATGGAAGCCCTTACCC
TTATTTAACTCTCTGGCCCAATGTAATTCTCTCCCCTTTTAATATCCAAA
ATTTATAAAAAGGGTCTCTCCTTTAACCACAAAAAAAACCGCGCGCTACT
TTTTCGTTTTTTCCCACCTGAAGGTGCGTCTCCACCCCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_d13.g1 MSMg01no332_d13.g1 CHROMAT_FILE:
MSMg01no332_d13.g1 PHD_FILE: MSMg01no332_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:27 2005
         (732 letters)



>mm_chr10_50320022_50321153
          Length = 1132

 Score = 1326 bits (686), Expect = 0.0
 Identities = 727/754 (96%), Gaps = 22/754 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    atacaaaatgtatgcttatgtattttacaaacataaaaatagagattgtgttatttactg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 atacaaaatgtatgcttatgtattttacaaacataaaaatagagattgtgttatttactg 1010

                                                                        
Query: 61   agaaaccttgtttctagttgtggtgtggctcagcctttagcatacataacaccgtcaatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1009 agaaaccttgtttctagttgtggtgtggctcagcctttagcatacataacaccttcaatc 950

                                                                        
Query: 121  actgtggctggaatacagactgcagaggagtttgagccagaacagctgagttgaaccagc 180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  actgtggctggaatatagactgcagaggagtttgagccagaacagctgagttgaaccagc 890

                                                                        
Query: 181  cagccagtgttcagaaagaactaaaaagagtgagcttatgcagcagtaagtctcaggggc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  cagccagtgttcagaaagaactaaaaagagtgagcttatgcagcagtaagtctcaggggc 830

                                                                        
Query: 241  tgagaacattctaagcctagatcagattgtacagaggcgagaatcttccaagactaggcc 300
            |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 829  tgagaacattctaagcttagatcagattgtacagaggcgagaagcttccaagactaggcc 770

                                                                        
Query: 301  taggttagc---------------agacaattacatcaagtgaactaaagatatcttcac 345
            |||||||||               ||||||||||||||||||||||||||||||||||||
Sbjct: 769  taggttagcagactcaagccagggagacaattacatcaagtgaactaaagatatcttcac 710

                                                                        
Query: 346  atgtttataaactgaatctctagggatgttctaggaacaggtttagatgcttggaattaa 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  atgtttataaactgaatctctagggatgttctaggaacaggtttagatgcttggaattaa 650

                                                                        
Query: 406  aggaagtttgaaacatctctccattcctagtaggagctttacaattagaaagcattttct 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  aggaagtttgaaacatctctccattcctagtaggagctttacaattagaaagcattttct 590

                                                                        
Query: 466  ccaaatacaaaaattattcataaaaggttgtgccatcc-------ttaattattcactat 518
            ||||||||||||||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 589  ccaaatacaaaaattattcataaaaggttgtgccatccttaatcattaattattcactat 530

                                                                        
Query: 519  tgctaaatggataatggtggatattctcctcccgcccccggtttttttgagacagggttt 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tgctaaatggataatggtggatattctcctcccgcccccggtttttttgagacagggttt 470

                                                                        
Query: 579  ctctgtgtagtcctggctgtcctagaactcactgtatagaccaggctggccttgaactca 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  ctctgtgtagtcctggctgtcctagaactcactgtatagaccaggctggccttgaactca 410

                                                                        
Query: 639  gaaatccgcttgcctctgcctctcaagtgctgggattaaaggcgtgcaccaccacttccc 698
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 409  gaaatccgcttgcctctgcctctcaagtgctgggattaaaggcgtgcaccaccactcccc 350

                                              
Query: 699  gaccaatcacatacttgttgtcagctgatgaaat 732
            ||||||||||||||||||||||||||||||||||
Sbjct: 349  gaccaatcacatacttgttgtcagctgatgaaat 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space:   810084
Effective search space used:   810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)