Query= MSMg01no332_m06.b1 MSMg01no332_m06.b1 CHROMAT_FILE:
MSMg01no332_m06.b1 PHD_FILE: MSMg01no332_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:34 2005
(620 letters)
>mm_chr10_17324231_17325250
Length = 1020
Score = 1152 bits (596), Expect = 0.0
Identities = 614/620 (99%), Gaps = 1/620 (0%)
Strand = Plus / Plus
Query: 1 cgtcccaaagctgaccacctgagtgtaatgtccagtgttaacatagtagagggaaagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtcccaaagctgaccacctgagtgtaatgtccagtgttaacatagtagagggaaagaac 260
Query: 61 tgacttgtgcaaattgtcctctgacctgtccaaccatgctgtagcacatgagcacaaacc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttgtgcaaattgtcctgtgacctgtccaaccatgctgtagcacatgagcacaaacc 320
Query: 121 aaattgatggattaattaaatgtagttacaatgagaaatatcagggtacaaaaattaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgatggattaattaaatgtagttacaatgagaaatatcagggtacaaaaattaaca 380
Query: 181 tataaagtatgcagccttcacatacacaaaccaaaccaaattagaagatatattctcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaagtatgcagccttcacatacacaaaccaaaccaaattagaagatatattctcttt 440
Query: 241 acaagacccacagaaagattttaaaacttaagaatattcttaaaaaaataaaatacaaaa 300
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 441 acaagacccacagaaagattttaaaacttaagaataaacttaaaaaagtaaaatacaaaa 500
Query: 301 tttggttgaatactacaacactcctgaaagagaaaaatagacatcatagaatcagagttt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggttgaatactgcaacactcctgaaagagaaaaatagacatcatagaatcagagttt 560
Query: 361 ccctttcctcttggcaaggatgactcacggttacaaagacatcaatcctgtctcttctag 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctttc-tcttggcaaggatgactcacggttacaaagacatcaatcctgtctcttctag 619
Query: 421 taaatatataaatataatgcaatcccaataaacatccaataaaccctgtgggaaatagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaatatataaatataatgcaatcccaataaacatccaataaaccctgtgggaaatagtc 679
Query: 481 aagtcgaccctaaaattcatttgaaaacaaacatgcaagaataactagcaaggctctgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtcgaccctaaaattcatttgaaaacaaacatgcaagaataactagcaaggctctgaa 739
Query: 541 gacagggaatctaccagatatgaaattacactgagacatctacagattgtaaagtgtggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gacagggaatctaccagatatgaaattacactgagacatctacagattgtaaagtgtggt 799
Query: 601 actcaaatataaatagagat 620
||||||||||||||||||||
Sbjct: 800 actcaaatataaatagagat 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_m06.g1 MSMg01no332_m06.g1 CHROMAT_FILE:
MSMg01no332_m06.g1 PHD_FILE: MSMg01no332_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:34 2005
(751 letters)
>mm_chr10_17489141_17490291
Length = 1151
Score = 1210 bits (626), Expect = 0.0
Identities = 719/762 (94%), Gaps = 25/762 (3%)
Strand = Plus / Minus
Query: 1 cggagatacatggtgatatcctgtctc---aacataaaacaaagaagattaaacagaaga 57
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 964 cggagatacatggtgatatcctgtctcaaaaac--aaaacaaagaagattaaacagaaga 907
Query: 58 aaaaagaataagaaaaagaaaaagaaaaaggaaaagggaaagaagaagaaaaagaaaaag 117
||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 906 aaa------aagaaaaagaaaaagaaaaagga------aaagaagaagaaaaagaaaaag 859
Query: 118 gaaagatccaacacactacgcatggc-aaaaaattcaaatagc-----at--tgtaaata 169
|||||||||||||||||| ||||||| |||||||||||||||| || ||||||||
Sbjct: 858 gaaagatccaacacactaggcatggcaaaaaaattcaaatagcacacaattgtgtaaata 799
Query: 170 gaacacaaaggaacatgtctctactaactcatggttatgtggctgtgagccagctgatga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaacacaaaggaacatgtctctactaactcatggttatgtggctgtgagccagctgatga 739
Query: 230 acgtctgttacagattagtcttcagaaaataagaacaatatggtttcgggatagcaacat 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcgtctgttacagattagtcttcagaaaataagaacaatatggtttcgggatagcaacat 679
Query: 290 tttagggaaggagagctgagctcgtaggccacagttgcgcttcaactgaaattggcataa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttagggaaggagagctgagctcgtaggccacagttgcgcttcaactgaaattggcataa 619
Query: 350 ctgtagaagcaatggttttgttcgttgtggaaacagtctttgtggttccagaacttgttg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgtagaagcaatggttttgttcgttgtggaaacagtctttgtggttccagaacttgttg 559
Query: 410 aaaagcaaaaacctaaatgaagactgagttggtgctgaaaactggtgataattaagaaaa 469
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 558 aaaagcaaaaacctaaatgaagactgaattggtgctgaaaactggtgataattaggaaaa 499
Query: 470 attgtgatctaattttaaactctagaatttacaaattccaacatgtgtgtcatgagtgtg 529
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 498 attgtgatctaattttaaactctagaatttacgaattccaacatgtgtgtcatgcgtgtg 439
Query: 530 tttcagaggacacagggactcactcactacccaaaaggtgttatttaggcaacattttgt 589
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 tttgagaggacacagggactcactcactagccaaaaggtgttatttaggcaacattttgt 379
Query: 590 tgttgctgttgctgctgttttgtttttgagacccagtatctttctgtgtggcttgagctg 649
||||||||||| |||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 378 tgttgctgttgttgctgttttgtttttgagactcggtgtctttctgtgtagcttgagctg 319
Query: 650 tcatggacctcactatatggactcggctggcctctgcctgtgaagtgctagaattaaagg 709
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 318 tcctggacctcactatatggactcggctggcttctgcctgtgaagtgctggaattaaagg 259
Query: 710 tatgtgccactgtgcctggcttattcaggcagatttttttgt 751
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 tatgtgccactgtgcctggcttattcaggcaggcttttttgt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1151
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1141
Effective search space: 845481
Effective search space used: 845481
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
