BAC Information

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BAC

Clone NameMSMg01-332M11
Chromosome10 (Build37)
Map Location 43,872,153 - 43,872,805
singlet/doubletsinglet
Overlap genenone
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332M11.T7 (MSMg01no332_m11.b1)MSMg01-332M11.TJ (MSMg01no332_m11.g1)
ACCAG448718AG448719
length1,2481,309
length of high quality
(start - end)
653 (93 - 745)734 (91 - 824)
definitionCHROMAT_FILE: MSMg01no332_m11.b1 PHD_FILE: MSMg01no332_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:36 2005CHROMAT_FILE: MSMg01no332_m11.g1 PHD_FILE: MSMg01no332_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCGGTTCTTTGNNNNCCATTGGGCGCTAAGACTCACTAATGGAGAGGA
TCCGCGGAATTCGTTGAAAAATGAATCTCCTTCATAAGAGCTCAGAACAG
NATGTGAGAAGGTATATGGTCTATTCTTCCCTCTGCCCAGATATCTGACC
TATCTCAGAGGCAAGGCCCCTTCAACCAACACTGGTTCTTTTTTCTCTAT
CAAATCTTGTTTGAATTTCATTTTAACCTGACAGTCTATAGAAATGCCCA
TAATTCTCCACACACCCCACAAATAAATCTTTTCTTCCTTGATCCTTAAA
TTGGGCAGGAAAGCTTCCTCATCAGCAAATATAACGTAGGCAGAACTTGA
ACACCGGAATGTAGGTCACTGCTTCTCTAAGAATCTCTCATCTGCACGTT
TGTTTAGAGATAATCTTGCCCTACAGTTCAGGTTGGCTTGGGATCGCTAG
ATAGACCAGGCTGGCCTCAAATTCATAGCAATACTCCTATGTCAGCTTCC
TGGTACTGCAGGAGATTACAGGCATGAGCTATCACACCTGACTTCCTTTT
GGATTCTTGCTGTGTGTCTGGAGTTGCCTGTGAGTGTTAAGAGGTGTGTG
GAGAATTTGCAATCATCATCAATAGACAACAGATAGCCAACCATTACATA
TGTGAGGCTGTCTGAGACCAGTCAGCCTCCACATAAGTCACACAGTGGTC
CAGGTGTATGGAAGATGGAGTTAGATACATTGCAGCTGCCCCAGGCCAAA
ACTGCCTGGCAGACTCAGGAGCTAACCAAATAGTGCTAGTTGAAGGCACT
TTTTTCATTTTATAATTTATGGATATTTTTAAAATAATGACATAACATAA
AATCCAAAGCAGGCTACTCGATTTCTATCTTAATTTGGAACCCGGAAGGG
GGCATAATTTGAAAGAAATGGGAAATCCCCCAATATTCACCCCCTTAAAA
TTTATTTTTTTCTTCAGGGCTGATTAAGAAAAAGGGAACTTACCTCCAAT
ATTTGTTAGTGGGCGCCCCGGCCAAAAAAAAAAAAAACTTTTTAAAAATT
TTGGGGAGAAGAAAACAGGAACTTTATACTCCCCCAAGGGCAAAAAAGAT
TTAANCCCCCCTTTTTTTAAAAAAAAATTCAGAAGAAAAATTTGATTCAG
GACCCTGTTCCGGGGGCCAAAAAAAATTCTCCCTAAAATCTCAAAAAGGG
AGGGGCCCCCCCCCCAAAAACAGTTCTGAGTCGGCGTAGAAAAAGAAA
NCCCCGTTTTTTTNNNAAGATGGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAATGAGGAATACCGA
ATGGCAGAGAAGCACCTGAACCCTTGTTCAACATCCTCAATCATCAGGGA
AATGCAAATCAAACAACCCTGAGATTCCACCTCACACCAGACAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGGAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTAGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAACAAAGAGAATCTTAACATATCTGTCTATCAG
GCTTGAAGGTAACACTCCAAAATCCAAGTATAGAGTTCAGCTCAGCGGTA
GAGTGCTTATCTAGCATATATGAAGTCCCAAGTTCAACTCCCAACACTGA
AGAGAAAGGGTGAGAGGGGAAAGAAAAATCACTTTATTTGCCAGAAATAA
TGATAAACAGTTAATTCCAGTTCTTTGGAAGTTGGGACAGAAAGATCACT
AGTATTAGGCCTTCCCTGGCTACTATGCCTGTTTTTTTGCCAACTTGTAC
AAAGNTAGGCCAAATTGAAAAAAAATTCTTAATTTTAAAAATGTTCTCGG
CACAACGGGCCTTTAAGCAAGCCTAAAGGGGCTTTTTTTTGATTAACAAT
TGACAGGGAAGGCCCCTTTCTCCCTAAGGGCGGCATGGCCCCATCTGCCC
CAAAGGTGCGCCCTAAATTTTTGAACAAGGAAGAAAAAAATCGTAAAAAA
AATTCCTTCAACCCCTCCTCCAAGATATTAAACCAGTATCGTGCGTAATT
CTTTCTAAAGGAGTGGTGTTCTTCCTCACAGTAAATAACCCTCTTCCCCC
CTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_m11.b1 MSMg01no332_m11.b1 CHROMAT_FILE:
MSMg01no332_m11.b1 PHD_FILE: MSMg01no332_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:36 2005
         (653 letters)



>mm_chr10_43871953_43873005
          Length = 1053

 Score = 1220 bits (631), Expect = 0.0
 Identities = 648/654 (99%), Gaps = 2/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagnatgtgagaaggtatatggtct-attcttccctctgcccagatatctgacct 59
           |||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 201 cagaacagcatgtgagaaggtatatggt-tgactcttccctctgcccagatatctgacct 259

                                                                       
Query: 60  atctcagaggcaaggccccttcaaccaacactggttcttttttctctatcaaatcttgtt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atctcagaggcaaggccccttcaaccaacactggttcttttttctctatcaaatcttgtt 319

                                                                       
Query: 120 tgaatttcattttaacctgacagtctatagaaatgcccataattctccacacaccccaca 179
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaatttcattttaatctgacagtctatagaaatgcccataattctccacacaccccaca 379

                                                                       
Query: 180 aataaatcttttcttccttgatccttaaattgggcaggaaagcttcctcatcagcaaata 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aataaaccttttcttccttgatccttaaattgggcaggaaagcttcctcatcagcaaata 439

                                                                       
Query: 240 taacgtaggcagaacttgaacaccggaatgtaggtcactgcttctctaagaatctctcat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taacgtaggcagaacttgaacaccggaatgtaggtcactgcttctctaagaatctctcat 499

                                                                       
Query: 300 ctgcacgtttgtttagagataatcttgccctacagttcaggttggcttgggatcgctaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgcacgtttgtttagagataatcttgccctacagttcaggttggcttgggatcgctaga 559

                                                                       
Query: 360 tagaccaggctggcctcaaattcatagcaatactcctatgtcagcttcctggtactgcag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagaccaggctggcctcaaattcatagcaatactcctatgtcagcttcctggtactgcag 619

                                                                       
Query: 420 gagattacaggcatgagctatcacacctgacttccttttggattcttgctgtgtgtctgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagattacaggcatgagctatcacacctgacttccttttggattcttgctgtgtgtctgg 679

                                                                       
Query: 480 agttgcctgtgagtgttaagaggtgtgtggagaatttgcaatcatcatcaatagacaaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agttgcctgtgagtgttaagaggtgtgtggagaatttgcaatcatcatcaatagacaaca 739

                                                                       
Query: 540 gatagccaaccattacatatgtgaggctgtctgagaccagtcagcctccacataagtcac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gatagccaaccattacatatgtgaggctgtctgagaccagtcagcctccacataagtcac 799

                                                                 
Query: 600 acagtggtccaggtgtatggaagatggagttagatacattgcagctgccccagg 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acagtggtccaggtgtatggaagatggagttagatacattgcagctgccccagg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)