BAC Information

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BAC

Clone NameMSMg01-333D18
Chromosome10 (Build37)
Map Location 118,489,696 - 118,663,036
singlet/doubletdoublet
Overlap geneLOC100042861, LOC674417, Cand1
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
Downstream geneGrip1, Helb, Irak3, Tmbim4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333D18.T7 (MSMg01no333_d18.b1)MSMg01-333D18.TJ (MSMg01no333_d18.g1)
ACCAG449045AG449046
length704736
length of high quality
(start - end)
330 (51 - 380)300 (75 - 374)
definitionCHROMAT_FILE: MSMg01no333_d18.b1 PHD_FILE: MSMg01no333_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:22 2005CHROMAT_FILE: MSMg01no333_d18.g1 PHD_FILE: MSMg01no333_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,662,724 - 118,663,036)(118,489,696 - 118,489,995)
sequence
GACTACCATTGGGTGTAGCCGCCGGAANTCTTTGTCACTTACCACAAATT
TGGAATTGATTTAAAGCATTGTTCCGTTATTACCTTACTGGGTTTGTATA
CAACTTTCAAGTTTGTTTTCATCTAGCTGTTTACATTTCTGTCTATAAGA
AAGGCCTGTAAATGGTGAGAGATCATTGGCTGACGTAGGGACTTCCACCC
TGAGACTTATTGTGAGTTTAAGACAGGTCTGTAACAGGTGCTGTGTGCTT
GGCAGGATGGCTCAGCAGGTAGAAGTGCTTGCTGTCAAGCTTGAAGATTT
GAATGAAATCACTAGATCCCACATAGTGGAAGAAGAGAGCCAACTCCCAC
AGTTTGTTTTCTGACTTTCTCACACACACACACATATTTTTCTCTCCCAC
ACCCGCGCACACANATACACATTTCCATATATATATATTATAAAAACATT
TACAATGATAGAGGATATACAAATGATTGGTATAGGAACCTGAATCGTTT
TTTCGAGACAGGGTTTCTCTGTGTATCCTTGGCTGTCCTAGGACTTGATT
TGTAGACCAGGCTGGCCTCGAACTTGATCCACCTGTTTCTCACTCTTTAA
TGCTGGGATTAAAAGTGTACACCACTGTGCCTGGTAATCTTTTTATCCCC
NGAAAACCTCCTGGGNNNGNANTCACANNGAAAANANNANGTAGCTGAGA
ACGC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTTATGACTGGAGGGCAGGGA
GAAAGAAGTTTTGTTTTGTTTTGTTTTGTTTCTTTCACAATGTTTATTTC
CAAGCAGATTCCAAACAAAAGGCAGATCAGGAGTTTAGGCTAAGACAGAG
ATCTGCAGGCAGGGAGGACTGCCATGGTCTAGCTGGCTCCTGTCAGGAGC
ATGAGTCTACACTTATTTCTCTCCTCACAGCTGCACAGGGAAGCACTCCA
GTGGCAGGTCACCACATATCTGCACTTATGACTTTCCCTCCGCTGGAAAA
TTCTGAGCCCATCATTACTGTTCCTTTTTCCATAGACATAGATGTTTCCA
GAGCCTGCTTTCCACCTCCGCAAACAAACCGCTGTCCTTTGACCCTCTGA
GGGTAGCAAGAATGAAGAAATCTACCACTACGAGGTGAGTGGAGTCCTGT
GGCAAAGGAAGACGTCAATGCCTAGCCTGGCAAATAGATATCCAAATGAC
AACCAAAAGGAATTGGATTCCAGGCTTAGTGAGAGACCTTGTCTTGAGAG
AGAGAGAGAGAATAATACTCTGATATTTTTTCCACATAACACCTTTTGTC
GCGTGCATTGTGCGATTGTTTGCCTTCGAAACTAAATATGATTTTTTCTA
AGTGTTACTCCTTGTTCTATATATTGAGCTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_d18.b1 MSMg01no333_d18.b1 CHROMAT_FILE:
MSMg01no333_d18.b1 PHD_FILE: MSMg01no333_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:22 2005
         (330 letters)



>mm_chr10_118662637_118663366
          Length = 730

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaattgatttaaagcattgttccgttattaccttactgggtttgtatacaactttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggaattgatttaaagcattgttccgttattaccttactgggtttgtatacaactttcaa 341

                                                                       
Query: 61  gtttgttttcatctagctgtttacatttctgtctataagaaaggcctgtaaatggtgaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 340 gtttgttttcatctagctgtttacatttctgtctataagaaaggcctgtaaaaggtgaga 281

                                                                       
Query: 121 gatcattggctgacgtagggacttccaccctgagacttattgtgagtttaagacaggtct 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gatcattggctgatgtagggacttccaccctgagacttattgtgagtttaagacaggtct 221

                                                                       
Query: 181 gtaacaggtgctgtgtgcttggcaggatggctcagcaggtagaagtgcttgctgtcaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtaacaggtgctgtgtgcttggcaggatggctcagcaggtagaagtgcttgctgtcaagc 161

                                                                       
Query: 241 ttgaagatttgaatgaaatcactagatcccacatagtggaagaagagagccaactcccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ttgaagatttgaatgaaatcactagatcccacatagtggaagaagagagccaactcccac 101

                        
Query: 301 agtttgttttctg 313
           |||||||||||||
Sbjct: 100 agtttgttttctg 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no333_d18.g1 MSMg01no333_d18.g1 CHROMAT_FILE:
MSMg01no333_d18.g1 PHD_FILE: MSMg01no333_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:22 2005
         (300 letters)



>mm_chr10_118489496_118490195
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttgttatgactggagggcagggagaaagaagttttgttttgttttgttttgtttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttgttatgactggagggcagggagaaagaagttttgttttgttttgttttgtttctt 260

                                                                       
Query: 61  tcacaatgtttatttccaagcagattccaaacaaaaggcagatcaggagtttaggctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaatgtttatttccaagcagattccaaacaaaaggcagatcaggagtttaggctaag 320

                                                                       
Query: 121 acagagatctgcaggcagggaggactgccatggtctagctggctcctgtcaggagcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagagatctgcaggcagggaggactgccatggtctagctggctcctgtcaggagcatga 380

                                                                       
Query: 181 gtctacacttatttctctcctcacagctgcacagggaagcactccagtggcaggtcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctacacttatttctctcctcacagctgcacagggaagcactccagtggcaggtcacca 440

                                                                       
Query: 241 catatctgcacttatgactttccctccgctggaaaattctgagcccatcattactgttcc 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatctgcacagatgactttccctccgctggaaaattctgagcccatcattactgttcc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)