Query= MSMg01no333_i16.b1 MSMg01no333_i16.b1 CHROMAT_FILE:
MSMg01no333_i16.b1 PHD_FILE: MSMg01no333_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:45 2005
(638 letters)
>mm_chr10_102048163_102049203
Length = 1041
Score = 1071 bits (554), Expect = 0.0
Identities = 600/638 (94%), Gaps = 37/638 (5%)
Strand = Plus / Plus
Query: 5 gaattctccttgtgtgtacttgccaatctggaaaagtacaaacaaacaaaca------ta 58
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattctccttgtgtgtacttgccaatctggaaaagtacaaacaaacaaacaaaaaccta 264
Query: 59 tgaaacatatgaaatctatattgggattgagagggggcacccaaaactggtacagataac 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 t---acatatgaaatctatattgggattgagagggggcacccaaaactggtacagataac 321
Query: 119 tgatacagatacagataatctatctatctatctatctatctatctatctatctatctatc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgatacagatacagataatctatctatctatctatctatctatctatctatctatctatc 381
Query: 179 tatctatctatctatctatctatctatctatctatctaaactgatacagataccagcatt 238
|||||||||| ||||||||||||||||||||||
Sbjct: 382 tatctatcta----------------------------aactgatacagataccagcatt 413
Query: 239 gaaatcaagatcatatttaggttactttagcctataattgaccaacaaagatcactaata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaaatcaagatcatatttaggttactttagcctataattgaccaacaaagatcactaata 473
Query: 299 aaaattaataaaataaatttagagtatttatctttttaaaatttaaagtctagcaggcta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaaattaataaaataaatttagagtatttatctttttaaaatttaaagtctagcaggcta 533
Query: 359 gttacacatcaccctatatcagttgtaattaatcagaattgagaaaggatccaaaactgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gttacacatcaccctatatcagttgtaattaatcagaattgagaaaggatccaaaactgt 593
Query: 419 tcagtccttatgtccccatttataaaactaaaactaaggggattttgataaacatatatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tcagtccttatgtccccatttataaaactaaaactaaggggattttgataaacatatatt 653
Query: 479 agttagtggttttcaaaataagtcatcagaagggattagttcattcttttgcagcatcaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agttagtggttttcaaaataagtcatcagaagggattagttcattcttttgcagcatcaa 713
Query: 539 accctggatacagggagtttttaaaatattcacattgcctttaattcttaaaatatagta 598
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 accctggatactgggagtttttaaaatattcacattgcctttaattcttaaaatatagta 773
Query: 599 tcacagtaaacagtatttatgccccttttggtagcgta 636
||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcacagtaaacagtatttatgccccttttggtagcgta 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1041
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1031
Effective search space: 647468
Effective search space used: 647468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_i16.g1 MSMg01no333_i16.g1 CHROMAT_FILE:
MSMg01no333_i16.g1 PHD_FILE: MSMg01no333_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:45 2005
(665 letters)
>mm_chr10_102088057_102089121
Length = 1065
Score = 891 bits (461), Expect = 0.0
Identities = 497/509 (97%)
Strand = Plus / Minus
Query: 157 agtaaatctcagaagctaaaacatttttggcctagcttagcagattgaggctgggagctg 216
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 agtaaatctcagaggctaaaacatttttggcctagcttagcagattgaggctgggagctg 1006
Query: 217 aagcctattgtaagatgaggagaagtttccagggttagccgaggcctaggggtagttagt 276
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aagcctattgtaagatgatgagaagtttccagggttagccgaggcctaggggtagttagt 946
Query: 277 acagagaaagaaatgctcacccagttttgctacagctctcctttcatcccttcttctgag 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 acagagaaagaaatgctcacccagttttgctacagctctcctttcatcccttcttctgag 886
Query: 337 gaaagaaagatgacatttacgtttacagtttcgtaactgaattttgtgttagagtgaata 396
|||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 885 gaaataaaaatgacatttatgtttacagtttcctaactgaattttgtgttagagtgaata 826
Query: 397 gaaagctgtttcactgtgcatcaggttaattctcatgtatacaaatggatttctatggcg 456
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 825 gaaagctgtttcactgtgcatcaggttaattctcatgtatacaaatggatttctatggtg 766
Query: 457 ttcatcacaatggaaaatatacatactaacttttgtttatttatacttcaggtgttgctc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttcatcacaatggaaaatatacatactaacttttgtttatttatacttcaggtgttgctc 706
Query: 517 acacaataattactctctgccaaagaatcgtgagttaagcacgccgaggtcagagaaggg 576
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 705 acacaataattactctctgccaaagaatcgtgagttaagcatgccgaggtcagagaagtg 646
Query: 577 gcgttggaactttatgcaattcagtttgtggttacttcatttactttacatctacttgcc 636
|| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 645 gctttggaattttatgcaattcagtttgtggttacttcatttactttacatctatttgcc 586
Query: 637 agcatttgctctttctttgtagcctctga 665
|||||||||||||||||||||||||||||
Sbjct: 585 agcatttgctctttctttgtagcctctga 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
