Query= MSMg01no334_f13.b1 MSMg01no334_f13.b1 CHROMAT_FILE:
MSMg01no334_f13.b1 PHD_FILE: MSMg01no334_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:44 2005
(549 letters)
>mm_chr10_98498712_98499660
Length = 949
Score = 632 bits (327), Expect = 0.0
Identities = 451/545 (82%), Gaps = 82/545 (15%)
Strand = Plus / Minus
Query: 87 ccaaagcaatgcatgagaaaatatttacaacatgtagtattctctttgaaggaggaggct 146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ccaaagcaatgcacgagaaaatatttacaacatgtagtattctctttgaaggaggaggct 887
Query: 147 ctcttggtggtcaaactatctccttttattattttttgtgcaaaat-------------- 192
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctcttggtggtcaaactatctccttttattattttttgtgcaaaatggtacagtacagat 827
Query: 193 ------------------------------------------gt---------------- 194
||
Sbjct: 826 tcttcggaatcagcgtttcattaggatggaagcagaaggaaggtgacaggaggggattca 767
Query: 195 --gcattgt--------taagaggggaactcagaaccctacaaaacaacacatacaaatg 244
||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 766 tagcattgttaagactgtaagagggaaactcagaactctacaaaacaacacatacaaatg 707
Query: 245 ctaaatgccagaagctcacacctacaagctggcgacattttattgtcagattccaaaggt 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 706 ctaaatgccagaagctcacacctacaagctggtgacattttattgtcagattccaaaggt 647
Query: 305 tttatcatctagcccagtattttcataggaatgccgttttctgtctgtaaagggctcagt 364
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 646 tttatcatctagcccagcatttgcatcggaatgccgttttctgtctgtaaagggctcagt 587
Query: 365 gctgtgtctctgagagtctagttaatcaataaggcttttcttgtctttgttatattttaa 424
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 586 gctgtgtctctgagagtctagttaatcaataaggcttttcgtgtctttgttatattttaa 527
Query: 425 ccatgtctcattgttcagtaagtcccaagaggtggtaagtaagcccggtactgccatcca 484
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 526 gcatgtctcattgttcagtaagtcctaagaggtggtaagtaagcctggtactgccatcca 467
Query: 485 ccatgaagcttgctttctgatcctttgcatcagctatttcctgtctggatgcgcccccac 544
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 466 ccatgaagcttgctttctgatcctttgcatcagctatttcctgtctggacgcgcccccac 407
Query: 545 cccca 549
|||||
Sbjct: 406 cccca 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_f13.g1 MSMg01no334_f13.g1 CHROMAT_FILE:
MSMg01no334_f13.g1 PHD_FILE: MSMg01no334_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:45 2005
(244 letters)
>mm_chr10_98315861_98316505
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 atttttaaaaactatgttgttgtcctggaaatgttttacaagctatcctttttctacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttaaaaactatgttgttgtcctggaaatgttttacaagctatcctttttctacctg 260
Query: 61 tatttggtaaatataaaaatattaaataacttccagattttt-atagaatataatcaata 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tatttggtaaatataaaaatattaaataacttccagattttttatagaatataatcaata 320
Query: 120 ttcagttttatattaaagtacaaacattcttaaattaaaaattaagttattcaatgataa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagttttatattaaagtacaaacattcttaaattaaaaattaagttattcaatgataa 380
Query: 180 aataaagcttaaagtgatttaaaaacaagtaataataaatgttagcatttaatgccttgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaagcttaaagtgatttaaaaacaagtaataataaatgttagcatttaatgccttgt 440
Query: 240 gtcct 244
|||||
Sbjct: 441 gtcct 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
